View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_low_11 (Length: 358)
Name: NF12684_low_11
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 15007435 - 15007759
Alignment:
| Q |
18 |
ctgactgttatgatttgcctccatcatcattagttgatgtgttgaaattcattgtttttatttactcattagttgttgaattcttgaatgaccatttgtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15007435 |
ctgactgttatgatttgcctccatcatcattagttgatgcgttgaaattcattgtttttatttactcattagttgttgaattcttgaatgaccatttgtt |
15007534 |
T |
|
| Q |
118 |
atcaaagttgtgatctctgtattaacagaaatcagtgaccacattagccttattattatcgaaagaagtgaacaatatatagcagctggtattataacat |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15007535 |
atcaaagttgcgatctctgtattaacagaaatcagtgaccacattagccttattattatcgaaagaagtgaacaatatatagcagctggtattataacat |
15007634 |
T |
|
| Q |
218 |
agaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattgtcttttagttaggcctcataat |
317 |
Q |
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| T |
15007635 |
tgaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattgtcttttagttaggcctcataat |
15007734 |
T |
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| Q |
318 |
tcaaatcatgtgaattagttcaaat |
342 |
Q |
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||||||||||||||||||||||||| |
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| T |
15007735 |
tcaaatcatgtgaattagttcaaat |
15007759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 40787025 - 40787175
Alignment:
| Q |
18 |
ctgactgttatgatttgcctccatcatcattagttgatgtgttgaaattcattgtttttatttactcattagttgttgaattcttgaatgaccatttgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
40787025 |
ctgactgttatgatttgcctccatcatcattacttgatgcgttgaaattcattgtttttatttactcattagttgttgaatttttgaatgacgatttgtt |
40787124 |
T |
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| Q |
118 |
atcaaagttgtgatctctgtattaacagaaatcagtgaccacattagcctt |
168 |
Q |
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| T |
40787125 |
atcaaagttgtgatctctgtattaacagaaatcagtgaccacattagcctt |
40787175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 157 - 331
Target Start/End: Original strand, 40787198 - 40787360
Alignment:
| Q |
157 |
cacattagccttattattatcgaaagaagtgaacaatatatagcagctggtattataacatagaagatattatataaaattgaatccaacctatatcata |
256 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40787198 |
cacattagcctttttattatcgaaagatgtgaacaatatatagcagctggtattataaca--gaagatattatataaaattgaatccaacctatatcata |
40787295 |
T |
|
| Q |
257 |
taatacttatggctctcatcatacaattttctataattgtcttttagttaggcctcataattcaaatcatgtgaa |
331 |
Q |
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||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |
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| T |
40787296 |
taatacttatggctctcatcatacaattt----------tcatttagttatgcctcataattcaaatcatgtgaa |
40787360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 39459258 - 39459155
Alignment:
| Q |
62 |
aaattcattgtttttatttactcattagttgttgaattcttgaatgaccatttgttatcaaagttgtgatctctgtattaacagaaatcagtgaccacat |
161 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
39459258 |
aaatacattgtttttatttactcattagttgttgtattcttgaatgaccatttgtcatcaaagctgtga----tgtattaacagaaatcagtgaccacat |
39459163 |
T |
|
| Q |
162 |
tagcctta |
169 |
Q |
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|||||||| |
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|
| T |
39459162 |
tagcctta |
39459155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 39459608 - 39459473
Alignment:
| Q |
18 |
ctgactgttatgatttgcctccatcatcattagttgatgtgttgaaattcattgtttttatttactcattagttgttgaattcttgaatgaccatttgtt |
117 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||| |||||||||||| || |
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| T |
39459608 |
ctgactgttatgagctgcctccatcatcattagttgatgcgttcaaattcagtgcttttatttactcattagttgttgaattcacgaatgaccatttttt |
39459509 |
T |
|
| Q |
118 |
atcaaagttgtgatc--tctgtattaacagaaatca |
151 |
Q |
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| ||||| |||||| |||||||||||| |||||| |
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| T |
39459508 |
agcaaagcagtgatctttctgtattaacataaatca |
39459473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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