View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12684_low_13 (Length: 315)

Name: NF12684_low_13
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12684_low_13
NF12684_low_13
[»] chr7 (19 HSPs)
chr7 (20-304)||(22830934-22831218)
chr7 (23-304)||(22889198-22889479)
chr7 (23-304)||(22814933-22815214)
chr7 (20-304)||(22839955-22840239)
chr7 (23-304)||(22858368-22858649)
chr7 (23-289)||(22893850-22894116)
chr7 (23-292)||(22898169-22898438)
chr7 (79-267)||(22885559-22885744)
chr7 (27-284)||(22809554-22809811)
chr7 (23-292)||(22875822-22876091)
chr7 (23-304)||(22805215-22805496)
chr7 (23-168)||(22880497-22880642)
chr7 (184-290)||(22880631-22880737)
chr7 (164-246)||(22922209-22922291)
chr7 (229-292)||(22842264-22842327)
chr7 (118-204)||(22913669-22913755)
chr7 (160-246)||(22933300-22933386)
chr7 (23-77)||(22826155-22826209)
chr7 (23-57)||(22913571-22913605)
[»] chr1 (1 HSPs)
chr1 (47-304)||(21150527-21150784)
[»] chr5 (1 HSPs)
chr5 (149-207)||(15628278-15628336)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 22830934 - 22831218
Alignment:
Q  20 aaggtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcat 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22830934 aaggtaacatcaatctttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcat 22831033  T
Q  120 cataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  22831034 cataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaattccaacatgattatcattgatatcatcaaactcaaaatttttacgagt 22831133  T
Q  220 gtcaagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattgatttggcagtgaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22831134 gtcaagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattgatttggtagtgaa 22831218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 22889198 - 22889479
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcat 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| | ||||| |||||  | ||||||    
T  22889198 gtaacatcaatctttttcttcactccatcatattcaatccatacctgcatagggtatccactggaaagggataaatccttgaattgaccataaccatcat 22889297  T
Q  123 aatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtc 222  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22889298 aatatcctgcaggagttgaatcagctgatttcaaatcattgatatcaattccaacatggttatcgttgatatcatcaaactcaaaattttgacgagtgtc 22889397  T
Q  223 aagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattgatttggcagtgaa 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||| |||| ||||||    
T  22889398 aagctcaacaccaaaaacatggttgctactgtttccactgttggaatcgttaaagagaccaaggtattgacttggtagtgaa 22889479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 22814933 - 22815214
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcat 122  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||  |||| ||| ||||||||| | ||||||| |||||  ||||| ||    
T  22814933 gtaacatcaatctttttcttcactccatcatagtcaatccatacctgtataggaaatccattggaaagggataactccctgaattgaccatgatcattat 22815032  T
Q  123 aatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtc 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  22815033 aatatcctgcaggagttgaattagctgatttcaaataattgatatcgataccaacatggttatcattgatatcatcaaactgcaaatcttgacgagtgtc 22815132  T
Q  223 aagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattgatttggcagtgaa 304  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||| ||||||| |||| ||||||    
T  22815133 aagctcaacaccaaaaacatggttgttactgtttccattgttggaatcgttaaagagaccaaggtattgacttggtagtgaa 22815214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 22839955 - 22840239
Alignment:
Q  20 aaggtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcat 119  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| ||||||||  |||||||||| ||||||||||  |   ||||    
T  22839955 aaggtaacatcaatctttttcttcactctatcatattcaatccatacttgcataggatatccactggagagggataaatccctgaatcgattatattcat 22840054  T
Q  120 cataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagt 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | || || ||||    
T  22840055 cgtaatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcactacttagaagagt 22840154  T
Q  220 gtcaagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattgatttggcagtgaa 304  Q
     ||||| |||||||||||||||||||||| || ||||||||||||||| | |||||||||||||| ||||||| |||| ||||||    
T  22840155 atcaagttcaacaccaaaaacatggttgccaccgtttccaatgttggattggttaaagagaccaaggtattgacttggtagtgaa 22840239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 22858368 - 22858649
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcat 122  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||| |   ||||||||||| || ||| ||    
T  22858368 gtaacatcaatatttttcttcactccatcatattctatccatacctgcataggatatccactagaaagggataagtcgttgaatcgaccaatagcattat 22858467  T
Q  123 aatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtc 222  Q
    | |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||| || ||||  ||||||    
T  22858468 agtatcctgcaggagttgaattagctgatttcaaattattgatgtcaataccagcatggttattattgatatcatcaaactcaagatcttgaatagtgtc 22858567  T
Q  223 aagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattgatttggcagtgaa 304  Q
    |||||||||| |||| |||||||||||| |||||||||||||||| | ||||||| |||||| |||||| ||||| ||||||    
T  22858568 aagctcaacagcaaacacatggttgctagtgtttccaatgttggaatcgttaaagggaccaaggtattggtttggaagtgaa 22858649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 22893850 - 22894116
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcat 122  Q
    |||||||||||| |||||||  | |||||||||||||||||||||||||||||||  |||||| |||||  || |||| ||||| ||||| || ||||||    
T  22893850 gtaacatcaatctttttcttttcaccatcatattcaatccatacctgcataggatagccactgataaggcttatattcttgaattgaccattaccatcat 22893949  T
Q  123 aatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |  ||| ||    
T  22893950 aatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcacgattttcaatagtatc 22894049  T
Q  223 aagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtat 289  Q
    ||| |||||||||||||| |||||||||   |||||| ||||||| | || ||||||||||| ||||    
T  22894050 aagttcaacaccaaaaacgtggttgctaggatttccattgttggaatcgtcaaagagaccaaggtat 22894116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 22898169 - 22898438
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcat 122  Q
    |||||||||||| |||||||  | |||||||||||||||||||||||||||||||  ||||||  |||||  |||||| ||| | ||||| || ||||||    
T  22898169 gtaacatcaatctttttcttttcaccatcatattcaatccatacctgcataggattgccactgaaaagggtcaaattcttgagttgaccattaacatcat 22898268  T
Q  123 aatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtc 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | |   |  ||| ||    
T  22898269 aatatcctgcaggagttgatttagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcattaaactcactactaataatagtatc 22898368  T
Q  223 aagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattga 292  Q
    ||| |||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||| |||||||    
T  22898369 aagttcaacaccaaaaacatggttgctactatttccattgttggatttgttaaagagaccaaggtattga 22898438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 267
Target Start/End: Original strand, 22885559 - 22885744
Alignment:
Q  79 tccactggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaaca 178  Q
    |||||||| ||||||||||||||||||||   ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22885559 tccactggaaagggataaattcctgaatc---cataatcatcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaata 22885655  T
Q  179 tggttatcattgatatcatcaaactcaaaattttgacgagtgtcaagctcaacaccaaaaacatggttgctactgtttccaatgttgga 267  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  22885656 tggttatcattgatttcatcaaactcaaaattttgatcagtgtcaagctcaataccaaaaacatggctgctactgtttccattgttgga 22885744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 284
Target Start/End: Original strand, 22809554 - 22809811
Alignment:
Q  27 catcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcataata 126  Q
    |||||||| |||||||  | |||||||||||||||||||| ||||||||||  ||||||  ||||   | |||| ||||| ||||| ||  |||||||||    
T  22809554 catcaatctttttcttttcaccatcatattcaatccatacatgcataggatagccactgaaaaggctcatattcttgaattgaccattactatcataata 22809653  T
Q  127 tcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtcaagc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  | || || |||| || ||     
T  22809654 tcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaatatggttatcattgatatcatcaaactcactacttagaagagtatctagt 22809753  T
Q  227 tcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaa 284  Q
    |||||||| ||||||||||| |||||||||||| ||||||| | ||||||||||||||    
T  22809754 tcaacaccgaaaacatggttactactgtttccattgttggattggttaaagagaccaa 22809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 22875822 - 22876091
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcat 122  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||| |||| |||||||  ||||||||||| ||||||||||  |   ||||| |    
T  22875822 gtaacatcaatcttttttttcactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatcgattatattcatcgt 22875921  T
Q  123 aatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtc 222  Q
    ||||||||| || ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||  | |   |  ||  ||    
T  22875922 aatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggttatcatcgatatcattaaactcattagtcaaaacagaatc 22876021  T
Q  223 aagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattga 292  Q
    ||| ||||||||||||||||||||||||||||||||| |||| || | |||||||||||||| |||||||    
T  22876022 aagttcaacaccaaaaacatggttgctactgtttccattgtttgaattgttaaagagaccaaggtattga 22876091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 22805215 - 22805496
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcat 122  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||  ||   | |||| | |||||  |||||| |    
T  22805215 gtaacatcaatctttttcttcactccatcataatcaatccatacctgtataggatttccactggaaaggtctactgttctgatttgaccatgatcatcgt 22805314  T
Q  123 aatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtc 222  Q
    ||||  |||||| ||||||   | ||||||||| ||||||||||| ||||||| | |||||||  |  | |||| |||||||||||| || |  ||||||    
T  22805315 aataggctgcagtagttgagacaactgatttcagatcattgatattaataccatcgtggttattgtcaacatcaccaaactcaaaatctttagaagtgtc 22805414  T
Q  223 aagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattgatttggcagtgaa 304  Q
    ||| |||||||||||||||||||||| |||||||||| ||||||| |  ||||||||||||| |||||||||||| ||||||    
T  22805415 aagttcaacaccaaaaacatggttgccactgtttccattgttggaatcattaaagagaccaaggtattgatttggtagtgaa 22805496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 22880497 - 22880642
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcat 122  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||| | |||||||| ||  ||||||||    
T  22880497 gtaacctcaatctttttcttcactccatcatagtcaatccatacctgcatgggatatccactggaaagggataaatccttgaatcgatcataatcatcat 22880596  T
Q  123 aatatcctgcaggagttgaattagctgatttcaaatcattgatatc 168  Q
    |||||||||||| | |||||||  ||||||||||||||||||||||    
T  22880597 aatatcctgcagaaattgaatttactgatttcaaatcattgatatc 22880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 22880631 - 22880737
Alignment:
Q  184 atcattgatatcatcaaactcaaaattttgacgagtgtcaagctcaacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagacca 283  Q
    |||||||||||| ||||||||||||| ||||  |||||||| ||||||| ||||||||||||||||| |||||||| ||||| |   || ||||||||||    
T  22880631 atcattgatatcgtcaaactcaaaatcttgaacagtgtcaaactcaacagcaaaaacatggttgctaatgtttccagtgttgaaagtgtcaaagagacca 22880730  T
Q  284 aagtatt 290  Q
    | |||||    
T  22880731 aggtatt 22880737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 22922209 - 22922291
Alignment:
Q  164 atatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtcaagctcaacaccaaaaacatggtt 246  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||| ||||  |||||||| ||||||| |||||| ||||||    
T  22922209 atatctataccaacatggttatcattaatatcaccaaactcaaaatcttgaacagtgtcaaactcaacagcaaaaagatggtt 22922291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 22842264 - 22842327
Alignment:
Q  229 aacaccaaaaacatggttgctactgtttccaatgttggagtagttaaagagaccaaagtattga 292  Q
    |||||||||||||||||||||||| |||||| ||||||| | |||||||||||||| |||||||    
T  22842264 aacaccaaaaacatggttgctactatttccattgttggaattgttaaagagaccaaggtattga 22842327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 22913669 - 22913755
Alignment:
Q  118 atcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactc 204  Q
    ||||||||||||||| | ||  || ||  ||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  22913669 atcataatatcctgccgaagccgatttctctgatttcaaaccattgatatcaattccaacatggttgtcattgatatcatcgaactc 22913755  T

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Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 22933386 - 22933300
Alignment:
Q  160 attgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtcaagctcaacaccaaaaacatggtt 246  Q
    |||||| || |||||||||||||||||||| ||||||||||||||||| | ||||  |||||||| ||| ||| |||||| ||||||    
T  22933386 attgatgtctataccaacatggttatcattaatatcatcaaactcaaagtcttgagcagtgtcaaactcgacagcaaaaatatggtt 22933300  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 22826155 - 22826209
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattcaatccatacctgcataggat 77  Q
    |||||||||||| |||| ||  | ||||||||||| |||||||||||||||||||    
T  22826155 gtaacatcaatctttttattttcaccatcatattctatccatacctgcataggat 22826209  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 22913571 - 22913605
Alignment:
Q  23 gtaacatcaatccttttcttcactccatcatattc 57  Q
    |||||||||||| ||||||||||||||||||||||    
T  22913571 gtaacatcaatctttttcttcactccatcatattc 22913605  T

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Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 47 - 304
Target Start/End: Complemental strand, 21150784 - 21150527
Alignment:
Q  47 ccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcaggagttgaattag 146  Q
    |||||||||||||||||||| |||||||||| |||||||  |||||||||||   |||||| | || ||||||||||||| ||||||| |||||| ||||    
T  21150784 ccatcatattcaatccatacatgcataggatatccactgaaaagggataaatcattgaatccatcattatcatcataatagcctgcagaagttgagttag 21150685  T
Q  147 ctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaaattttgacgagtgtcaagctcaacaccaaaaacatggtt 246  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  21150684 ctgatttcaaatcattgatatcaataccaacatggttattattgatatcatcaaactcaaaatcttgaacagtgtcaagctcaacaccaaaaacatggtt 21150585  T
Q  247 gctactgtttccaatgttggagtagttaaagagaccaaagtattgatttggcagtgaa 304  Q
    ||||||||||||| ||||||| | |||||||||||||| ||||||  |||| ||||||    
T  21150584 gctactgtttccattgttggaattgttaaagagaccaaggtattgtgttggtagtgaa 21150527  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 15628278 - 15628336
Alignment:
Q  149 gatttcaaatcattgatatcaataccaacatggttatcattgatatcatcaaactcaaa 207  Q
    ||||||||| ||||||| || |||||||||||||||||||| |||||||||||| ||||    
T  15628278 gatttcaaaccattgatgtctataccaacatggttatcattaatatcatcaaacccaaa 15628336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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