View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_low_15 (Length: 273)
Name: NF12684_low_15
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 42016775 - 42017017
Alignment:
| Q |
16 |
agagaggtgaaattgtagttatattgatatggttgattgtctttttcaagtnnnnnnnttagaagtccagaaggagatgaaaggttaataacgcagaaga |
115 |
Q |
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| T |
42016775 |
agagaggtgaaattgtagttatattaatatggttgattgtctttttcaagtaaaaaaattagaagtccagaaggaaatgaaaggttaataacgcagaaga |
42016874 |
T |
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| Q |
116 |
gttaactagcaacattcaaagttttgtcagaacttgattttaagtttaacacaatcaaaattctctcaatcctcgagggctcataattcatttaataagg |
215 |
Q |
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| T |
42016875 |
gttaactagcaacattcaaagttttgtcagaacttgattttaagtttaacacaatcaaaattctctcaatcctcgagggctcataattcatttaataagg |
42016974 |
T |
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| Q |
216 |
cagggctttgtatttcaaaaatgttctcttgttggcttatatg |
258 |
Q |
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| T |
42016975 |
cagggctttgtatttcaaaaatgttcttttgttggcttatatg |
42017017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 1250000 - 1250237
Alignment:
| Q |
21 |
ggtgaaattgtagttatattgatatggttgattgtctttttcaagtnnnnnnnttagaagtccagaaggagatgaaaggttaataacgcagaagagttaa |
120 |
Q |
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| T |
1250000 |
ggtgaaattgtagttatattaatatggttgattgtctttttcaagtaaaaaaattagaagtccagaaggaaatgaaaggttaataacgcagaagagttaa |
1250099 |
T |
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| Q |
121 |
ctagcaacattcaaagttttgtcagaacttgattttaagtttaacacaatcaaaattctctcaatcctcgagggctcataattcatttaataaggcaggg |
220 |
Q |
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| T |
1250100 |
ctagcaacattcaaagttttgtcagaacttgattttaagtttaacacaatcaaaattctctcaatcctcgagggctcataattcatttaataaggcaggg |
1250199 |
T |
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| Q |
221 |
ctttgtatttcaaaaatgttctcttgttggcttatatg |
258 |
Q |
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| T |
1250200 |
ctttgtatttcaaaaatgttctcttgttggcttatatg |
1250237 |
T |
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