View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_low_16 (Length: 269)
Name: NF12684_low_16
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 2489639 - 2489877
Alignment:
| Q |
20 |
ctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcatta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489639 |
ctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcatta |
2489738 |
T |
|
| Q |
120 |
atgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489739 |
atgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattat |
2489838 |
T |
|
| Q |
220 |
atttgtcgatgaggttgacagtatgcttgggcagtgaac |
258 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
2489839 |
atttgtcgatgaggttgacagtatgcttgggcagcgaac |
2489877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 35 - 252
Target Start/End: Complemental strand, 41591332 - 41591115
Alignment:
| Q |
35 |
ggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtcta |
134 |
Q |
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|||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
41591332 |
ggaatattgctatttgggcctcctggaactgggaaaacaatgctggcgaaggccattgcaaaggaagctggagcaagtttcattaatgtgtccatgtcta |
41591233 |
T |
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| Q |
135 |
ccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggt |
234 |
Q |
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| T |
41591232 |
ccatcacttctaaatggtttggtgaagatgagaagaatgttcgcgctttattcacacttgcatccaaagtctccccaactattatatttgtcgatgaggt |
41591133 |
T |
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| Q |
235 |
tgacagtatgcttgggca |
252 |
Q |
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||| || ||||||||||| |
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| T |
41591132 |
tgatagcatgcttgggca |
41591115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 11094746 - 11094520
Alignment:
| Q |
20 |
ctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcatta |
119 |
Q |
| |
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|||||||| |||||||| ||||| || || || |||||||| || |||||||||||||| |||||||| ||||| || || || |||||||||||||||| |
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| T |
11094746 |
ctaaagccatgtagaggtatattacttttcggtccacctggtaccggaaaaacaatgctagcaaaggcgattgcgaatgaagcaggagcaagtttcatta |
11094647 |
T |
|
| Q |
120 |
atgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattat |
219 |
Q |
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| || || ||||| || |||||||| |||||||| || ||||| || ||||||||||||||||| ||||| || ||||| ||||| | || |||||||| |
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| T |
11094646 |
acgtctcgatgtccacgatcacttcaaaatggttcggagaagatgaaaagaatgtccgagctttgttcacgctagcagctaaggttgctccgactattat |
11094547 |
T |
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| Q |
220 |
atttgtcgatgaggttgacagtatgct |
246 |
Q |
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||| |||||||| |||||||| ||||| |
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| T |
11094546 |
attcgtcgatgaagttgacagcatgct |
11094520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 39697136 - 39697027
Alignment:
| Q |
35 |
ggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtcta |
134 |
Q |
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||||||||||| ||||| || ||||| || |||||||||||||| |||||||| | |||| ||| |||||||||| ||||||||| | |||||||||| |
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| T |
39697136 |
ggaatattgctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggtagcaaccgaagctggagcaaatttcattaacatctccatgtcta |
39697037 |
T |
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| Q |
135 |
ccatcacttc |
144 |
Q |
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||| ||||| |
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| T |
39697036 |
gcattacttc |
39697027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 44926654 - 44926730
Alignment:
| Q |
47 |
tttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgt |
123 |
Q |
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| T |
44926654 |
tttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgt |
44926730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 44935086 - 44935170
Alignment:
| Q |
39 |
tattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgt |
123 |
Q |
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| T |
44935086 |
tattgctttttggacctcctggtacaggaaagacaatgcttgccaaggcaattgcaaatgaagctggagcaagtttcatcaatgt |
44935170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 45988472 - 45988556
Alignment:
| Q |
39 |
tattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgt |
123 |
Q |
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| T |
45988472 |
tattgctttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgctaatgaatctggagcaagtttcatcaatgt |
45988556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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