View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_low_19 (Length: 242)
Name: NF12684_low_19
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 52464701 - 52464576
Alignment:
| Q |
16 |
acagaacccaaaaccccacctatagaactggtcaagtcggatccgatccacgattgtgattctcatgatgaggagaatagcaaaccgatgatgaagaaat |
115 |
Q |
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| T |
52464701 |
acagaacccaaaaccccacctatagaactggtcaagtcggatccgatccacgattgtgattctgatgatgaggagaatagcaaaccgatgatgaagaaat |
52464602 |
T |
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| Q |
116 |
cagcgagcgagaaagagtgttcaatg |
141 |
Q |
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| T |
52464601 |
cagcgagcgagaaagagtgttcaatg |
52464576 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 52464580 - 52464526
Alignment:
| Q |
188 |
caatggcgaggagtgaatcagcgacgagtaaagaagaagatgaagcggatgatgc |
242 |
Q |
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| T |
52464580 |
caatggcgagaagtgaatcaacgacgagtaaagaagaagatgaagcggatgatgc |
52464526 |
T |
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