View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12684_low_20 (Length: 214)
Name: NF12684_low_20
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 3838736 - 3838919
Alignment:
| Q |
16 |
aagggaaatcgcaaacaaaaacaaaagataataggnnnnnnntattaaatttctctttagatggatcaataagaataatcatgaacaagtttgacatctt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3838736 |
aagggaaatcgcaaacaaaaacaaaagataataggaaaaaaatattaaatttctctttagatggatcaatacgaataatcatgaacaagtttgacatctt |
3838835 |
T |
|
| Q |
116 |
atagcacaataccatt-ataatcaactactcattctacacaagcaacactattatgtcaacaatggtagtatggatggaagaaa |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3838836 |
atagcacaataccattgataatcaactactcattctacacaagcaacactattatgtcaacaatggtagtatggatggaagaaa |
3838919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University