View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12684_low_21 (Length: 214)

Name: NF12684_low_21
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12684_low_21
NF12684_low_21
[»] chr7 (30 HSPs)
chr7 (1-196)||(3046481-3046669)
chr7 (1-186)||(12256929-12257107)
chr7 (64-192)||(26342169-26342297)
chr7 (68-196)||(4931189-4931319)
chr7 (6-196)||(21672117-21672300)
chr7 (1-196)||(42625578-42625772)
chr7 (64-179)||(13313331-13313448)
chr7 (64-196)||(23247559-23247692)
chr7 (1-139)||(12181811-12181944)
chr7 (1-186)||(3880875-3881057)
chr7 (66-196)||(10392087-10392221)
chr7 (64-153)||(26286203-26286292)
chr7 (94-192)||(44508300-44508400)
chr7 (82-196)||(23151686-23151804)
chr7 (64-186)||(4580427-4580551)
chr7 (64-137)||(10387410-10387484)
chr7 (108-196)||(2595776-2595866)
chr7 (1-39)||(27239062-27239100)
chr7 (1-114)||(8269207-8269312)
chr7 (64-117)||(12800352-12800405)
chr7 (66-132)||(9814941-9815008)
chr7 (66-132)||(10716866-10716933)
chr7 (114-196)||(12802295-12802378)
chr7 (1-39)||(10392241-10392279)
chr7 (3-39)||(23247891-23247927)
chr7 (1-39)||(6590164-6590202)
chr7 (1-39)||(16373255-16373293)
chr7 (1-39)||(27246697-27246735)
chr7 (142-186)||(8269350-8269394)
chr7 (64-100)||(44508427-44508463)
[»] chr2 (27 HSPs)
chr2 (64-196)||(25496384-25496518)
chr2 (1-196)||(12797836-12798026)
chr2 (64-196)||(17974351-17974485)
chr2 (64-196)||(18345378-18345512)
chr2 (68-196)||(30651880-30652010)
chr2 (64-196)||(17967964-17968098)
chr2 (64-196)||(25477289-25477423)
chr2 (1-185)||(29678585-29678763)
chr2 (64-196)||(9179726-9179861)
chr2 (64-196)||(12361211-12361341)
chr2 (66-156)||(40846622-40846714)
chr2 (64-192)||(19896912-19897040)
chr2 (64-196)||(9184417-9184552)
chr2 (64-186)||(19891517-19891639)
chr2 (65-160)||(15446319-15446416)
chr2 (1-160)||(24537059-24537212)
chr2 (64-160)||(28604048-28604145)
chr2 (64-160)||(31329024-31329122)
chr2 (64-160)||(31335745-31335843)
chr2 (64-138)||(44630508-44630582)
chr2 (79-196)||(20101650-20101769)
chr2 (64-196)||(42925676-42925808)
chr2 (64-160)||(25637801-25637898)
chr2 (115-196)||(1934009-1934092)
chr2 (1-39)||(12002056-12002094)
chr2 (64-121)||(34495183-34495240)
chr2 (1-37)||(40846735-40846771)
[»] chr5 (27 HSPs)
chr5 (64-196)||(37536937-37537072)
chr5 (64-196)||(6154432-6154566)
chr5 (64-196)||(26668240-26668374)
chr5 (64-196)||(26939837-26939971)
chr5 (64-196)||(29166973-29167107)
chr5 (64-196)||(37247799-37247933)
chr5 (64-186)||(7452717-7452841)
chr5 (64-196)||(37646055-37646191)
chr5 (64-156)||(40148805-40148897)
chr5 (64-139)||(12104016-12104091)
chr5 (64-196)||(36424600-36424734)
chr5 (64-186)||(10759371-10759495)
chr5 (64-196)||(35678898-35679032)
chr5 (64-186)||(36430480-36430604)
chr5 (1-196)||(20180155-20180339)
chr5 (64-160)||(17162818-17162917)
chr5 (64-160)||(17159338-17159437)
chr5 (75-185)||(6511614-6511726)
chr5 (64-133)||(16115294-16115363)
chr5 (65-157)||(23689034-23689128)
chr5 (68-196)||(39519361-39519481)
chr5 (109-196)||(23757164-23757253)
chr5 (109-196)||(23822620-23822709)
chr5 (74-160)||(4872854-4872942)
chr5 (68-196)||(39524000-39524120)
chr5 (1-37)||(16115381-16115417)
chr5 (75-139)||(40567661-40567725)
[»] chr4 (36 HSPs)
chr4 (64-196)||(8694675-8694809)
chr4 (64-196)||(55252606-55252741)
chr4 (1-196)||(16421953-16422142)
chr4 (64-196)||(31728366-31728499)
chr4 (3-199)||(12822907-12823097)
chr4 (68-196)||(37263563-37263693)
chr4 (6-186)||(13064823-13064994)
chr4 (70-196)||(31274482-31274610)
chr4 (64-196)||(33468003-33468136)
chr4 (1-196)||(51698833-51699025)
chr4 (1-160)||(29349242-29349396)
chr4 (64-196)||(5270423-5270557)
chr4 (68-180)||(37258879-37258993)
chr4 (1-160)||(2820700-2820852)
chr4 (64-186)||(13060428-13060553)
chr4 (1-160)||(32081201-32081354)
chr4 (64-184)||(19107540-19107663)
chr4 (64-186)||(5925814-5925929)
chr4 (1-122)||(19907155-19907268)
chr4 (64-186)||(32220574-32220698)
chr4 (4-137)||(6943684-6943819)
chr4 (64-160)||(19102928-19103026)
chr4 (82-196)||(19907269-19907384)
chr4 (64-186)||(27183197-27183311)
chr4 (72-196)||(8029335-8029457)
chr4 (64-160)||(23094071-23094167)
chr4 (64-196)||(33462358-33462488)
chr4 (68-184)||(40408913-40409028)
chr4 (64-160)||(12875366-12875464)
chr4 (64-139)||(31766834-31766909)
chr4 (75-177)||(47245103-47245205)
chr4 (64-160)||(48275875-48275970)
chr4 (75-131)||(8028215-8028271)
chr4 (64-160)||(12878864-12878961)
chr4 (1-39)||(39216249-39216287)
chr4 (1-39)||(40408849-40408887)
[»] chr1 (21 HSPs)
chr1 (64-196)||(10136287-10136421)
chr1 (64-186)||(16648639-16648764)
chr1 (68-196)||(25844722-25844852)
chr1 (64-195)||(51040522-51040655)
chr1 (64-160)||(11807181-11807279)
chr1 (64-160)||(16036568-16036666)
chr1 (64-192)||(38622151-38622281)
chr1 (64-153)||(12260938-12261028)
chr1 (111-186)||(8138602-8138678)
chr1 (64-160)||(23191875-23191971)
chr1 (96-186)||(46697309-46697399)
chr1 (64-139)||(19798054-19798129)
chr1 (64-184)||(40166902-40167024)
chr1 (64-136)||(26926780-26926854)
chr1 (1-104)||(10141001-10141095)
chr1 (1-39)||(8138540-8138578)
chr1 (64-158)||(39199805-39199905)
chr1 (8-104)||(47450287-47450375)
chr1 (1-39)||(33300412-33300450)
chr1 (1-39)||(38621619-38621657)
chr1 (1-38)||(19798147-19798184)
[»] chr8 (22 HSPs)
chr8 (1-196)||(38181282-38181471)
chr8 (1-186)||(15950582-15950764)
chr8 (1-196)||(2966492-2966681)
chr8 (64-196)||(1808413-1808546)
chr8 (64-185)||(44924932-44925055)
chr8 (64-160)||(33417492-33417590)
chr8 (68-196)||(40124894-40125024)
chr8 (64-196)||(1909947-1910081)
chr8 (89-193)||(17021243-17021348)
chr8 (89-193)||(17551680-17551785)
chr8 (64-186)||(18875395-18875519)
chr8 (64-137)||(26780066-26780139)
chr8 (64-154)||(28559158-28559250)
chr8 (64-184)||(28564309-28564429)
chr8 (80-196)||(7002623-7002741)
chr8 (64-102)||(23547700-23547738)
chr8 (1-39)||(19168672-19168710)
chr8 (1-39)||(22714149-22714187)
chr8 (1-39)||(44925072-44925110)
chr8 (76-160)||(17953183-17953267)
chr8 (64-153)||(24672364-24672453)
chr8 (64-138)||(33100550-33100623)
[»] chr3 (23 HSPs)
chr3 (1-196)||(20520868-20521057)
chr3 (64-186)||(18472968-18473092)
chr3 (64-196)||(7570215-7570349)
chr3 (1-160)||(14437726-14437879)
chr3 (64-196)||(757364-757497)
chr3 (68-196)||(23660489-23660619)
chr3 (68-196)||(23665121-23665251)
chr3 (64-196)||(55326739-55326872)
chr3 (1-196)||(12970808-12970999)
chr3 (1-196)||(46964920-46965108)
chr3 (64-196)||(3656257-3656391)
chr3 (64-196)||(18468174-18468308)
chr3 (64-184)||(27709893-27710013)
chr3 (64-133)||(39774890-39774959)
chr3 (6-185)||(12111605-12111769)
chr3 (80-159)||(7860686-7860767)
chr3 (64-196)||(12964883-12965018)
chr3 (77-196)||(20175368-20175486)
chr3 (64-160)||(55432189-55432285)
chr3 (64-138)||(29351189-29351263)
chr3 (76-139)||(3426047-3426110)
chr3 (1-39)||(3419900-3419938)
chr3 (1-39)||(55432134-55432172)
[»] chr6 (26 HSPs)
chr6 (64-196)||(11569692-11569825)
chr6 (1-196)||(11533702-11533890)
chr6 (1-196)||(11559212-11559400)
chr6 (1-196)||(20747297-20747486)
chr6 (1-182)||(25313487-25313664)
chr6 (1-182)||(26200981-26201158)
chr6 (64-196)||(17963558-17963692)
chr6 (1-196)||(12405360-12405549)
chr6 (64-196)||(6406860-6406994)
chr6 (64-196)||(16835161-16835296)
chr6 (64-196)||(17600342-17600473)
chr6 (64-186)||(19994395-19994518)
chr6 (64-177)||(11612922-11613037)
chr6 (1-196)||(2699114-2699304)
chr6 (75-160)||(12689942-12690028)
chr6 (64-196)||(33686644-33686777)
chr6 (64-196)||(22694385-22694517)
chr6 (64-157)||(22610473-22610568)
chr6 (64-139)||(5856947-5857022)
chr6 (70-196)||(12797782-12797914)
chr6 (1-138)||(17914499-17914628)
chr6 (1-39)||(11428873-11428911)
chr6 (64-196)||(19674735-19674868)
chr6 (77-186)||(11428933-11429043)
chr6 (1-39)||(4156486-4156524)
chr6 (66-104)||(14509941-14509979)
[»] scaffold0352 (1 HSPs)
scaffold0352 (64-196)||(8071-8205)
[»] scaffold0690 (1 HSPs)
scaffold0690 (1-196)||(6139-6328)
[»] scaffold0054 (2 HSPs)
scaffold0054 (1-196)||(30084-30273)
scaffold0054 (66-160)||(26405-26501)
[»] scaffold0002 (2 HSPs)
scaffold0002 (64-196)||(442940-443073)
scaffold0002 (68-182)||(5030-5146)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-196)||(36029-36217)
[»] scaffold0240 (1 HSPs)
scaffold0240 (1-186)||(4878-5055)
[»] scaffold0011 (1 HSPs)
scaffold0011 (79-186)||(64904-65013)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 3046481 - 3046669
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||| | |||        ||||||||||||||||||||||||||||| |||||||    
T  3046481 taaatttataggaagtgatattcacgaataaaaattatagtaattattattttta--------tcattatcaagtatttaaaattaaataccgcaattta 3046572  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||||||| ||||||||||||| |||| |||  |||||||||||||| | ||  |||||||||| |||||||| ||| |||||    
T  3046573 aacactactaatgtgtgtgttctattttatgtgggaccccacacttaattttttcaattcacacaactttatatcaaattataattacttggtgttt 3046669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 12256929 - 12257107
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    |||||||||||||||||||||||||||||||||||||||      ||||||||||        ||||||||||||||||||||||||||||| |||||||    
T  12256929 taaatttatgggaagtgatattcacgaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaaataccacaattta 12257020  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagtataatta 186  Q
    |||| | |||||| |||||||| ||||||||||||| |||| ||||||||||||||||| | | || |||| |||||||||||||||    
T  12257021 aacactactaatgcgtgtgttctattttatgtgggaccccacactctattttttcaatttacacaacattaaatcaaagtataatta 12257107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 26342169 - 26342297
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagat 163  Q
    ||||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||| ||||||||||||||||  || |||||||||||||||| ||    
T  26342169 tcattatcaagtatttaaaattaaatatcacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactattttttcaattcacat 26342268  T
Q  164 aatattatatcaaagtataattagttgat 192  Q
    ||||||| || |||||||||||| |||||    
T  26342269 aatattaaattaaagtataattacttgat 26342297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 4931189 - 4931319
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| ||||  |||| ||||||||||||||||||| | ||    
T  4931189 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaa 4931288  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||||||||||||||||||| ||| |||||    
T  4931289 cattatatcaaagtataattacttggtgttt 4931319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 21672117 - 21672300
Alignment:
Q  6 ttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaatttaaacat 105  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||        |||||||||||||| |||||||||||||| |||||||||||     
T  21672117 ttatgggaagtgatattcacgaataaaaataata------attactattattttta--tcattatcaagtatataaaattaaataccgcaatttaaacag 21672208  T
Q  106 tgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    | |||||||||||| || ||||||||||||| |||| | ||||||||||||||||| | ||  ||| ||||||||||||||| ||| |||||    
T  21672209 tactaatgtgtgtgctctattttatgtgggatcccacattctattttttcaattcacacaacgttagatcaaagtataattacttggtgttt 21672300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 42625772 - 42625578
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatac-----ctca 95  Q
    ||||||||||| ||||||||||| |||||||||||||||      ||||||||||        ||||||||||||||||||||||||||||     | ||    
T  42625772 taaatttatggaaagtgatattctcgaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaaatactgcaccgca 42625681  T
Q  96 atttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataatattatatcaaagtataattagttgatg 193  Q
    ||||||||| | |||||||||| |||| ||||||||||||||||  | ||||||||||||||||||| |||| |||| ||||||||||||||| ||| ||    
T  42625680 atttaaacactactaatgtgtgagttctattttatgtgggacccccacactctattttttcaattcacataacattagatcaaagtataattacttggtg 42625581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 13313448 - 13313331
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||     
T  13313448 tcattatcaagtatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggacatccacactctattttttcaattcac 13313349  T
Q  162 ataatattatatcaaagt 179  Q
    | |||| || ||||||||    
T  13313348 acaatactaaatcaaagt 13313331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 23247692 - 23247559
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacc-catactctattttttcaattcaga 162  Q
    |||||||||||||||||||||||||||||  |||||||||| | ||||||| ||| ||| |||||| ||||||||  | ||||||||||||||||||| |    
T  23247692 tcattatcaagtatttaaaattaaataccgtaatttaaacactactaatgtttgttttctattttaggtgggaccatacactctattttttcaattcaca 23247593  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
    ||| |||| ||||||||||||||| ||| |||||    
T  23247592 taacattagatcaaagtataattacttggtgttt 23247559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 12181944 - 12181811
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||| |||||||||||||||||||||||| |||    || ||||||||||        ||||||||||||||||||||||||||||| |||||||    
T  12181944 taaatttattggaagtgatattcacgaataaaaaaaatg---attattactattattttta--tcattatcaagtatttaaaattaaataccgcaattta 12181850  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggaccc 139  Q
    |||| | ||||||||||||||| ||||||||||||||||    
T  12181849 aacactactaatgtgtgtgttctattttatgtgggaccc 12181811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 3880875 - 3881057
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||||| |||||||||||||      ||||||||||        ||||||||||||||||||||||||||| | |||||||    
T  3880875 taaatttatgggaagtgatattcacaaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaaatatcacaattta 3880966  T
Q  101 aacattgcta---atgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataatta 186  Q
    | || | |||   |||||||||||| |||||||||| ||  |||| |||||||||||||||||||   ||||||| |||||||||||||||    
T  3880967 agcactactaatgatgtgtgtgttctattttatgtgagacccccacactctattttttcaattcacgcaatattagatcaaagtataatta 3881057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 10392221 - 10392087
Alignment:
Q  66 attatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacc--catactcta--ttttttcaattcag 161  Q
    ||||||||||||||||||||||||||| ||||||||||| || |||  ||||||||| |||||||||||| ||  || ||||||  |||||||||||||     
T  10392221 attatcaagtatttaaaattaaataccgcaatttaaacactgataacatgtgtgttctattttatgtggggccctcacactctattttttttcaattcac 10392122  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || | || ||||||||||||||| ||| |||||    
T  10392121 acaacactagatcaaagtataattacttggtgttt 10392087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 26286292 - 26286203
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctatttttt 153  Q
    |||||||||  |||||||||||||||||| | ||||||||| | ||||||||||||||| ||||||||||||||||  || |||||||||    
T  26286292 tcattatcagttatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactatttttt 26286203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 44508400 - 44508300
Alignment:
Q  94 caatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttga 191  Q
    ||||||||||| | ||||| ||||||||| ||||||| |||||  |||| ||||||||||||||||||| | ||||||| ||||||||||||||| ||||    
T  44508400 caatttaaacactactaatatgtgtgttctattttatatgggattcccacactctattttttcaattcacacaatattagatcaaagtataattacttga 44508301  T
Q  192 t 192  Q
    |    
T  44508300 t 44508300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 23151804 - 23151686
Alignment:
Q  82 aattaaatacctcaatttaaacattgctaat--gtgtgtgttccattttatgtgggac--ccatactctattttttcaattcagataatattatatcaaa 177  Q
    ||||||||| ||||||||||||| | |||||  |||||||||| |||||||| |||||  ||| ||| ||||||||||||||| | || |||| ||||||    
T  23151804 aattaaatatctcaatttaaacactactaatatgtgtgtgttctattttatgcgggactcccacactttattttttcaattcacacaacattagatcaaa 23151705  T
Q  178 gtataattagttgatgttt 196  Q
    ||||||||| |||||||||    
T  23151704 gtataattacttgatgttt 23151686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 4580427 - 4580551
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcag 161  Q
    ||||||||| ||||||| ||||||||||| | || |||||| | ||||||||||||||| ||||||| ||||||||  | |||||||||||| ||||||     
T  4580427 tcattatcaggtatttagaattaaataccactatataaacactactaatgtgtgtgttctattttatatgggacccctacactctatttttttaattcac 4580526  T
Q  162 ataatattatatcaaagtataatta 186  Q
    | || | || |||||||| ||||||    
T  4580527 acaacactaaatcaaagtttaatta 4580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 10387484 - 10387410
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaaca-ttgctaatgtgtgtgttccattttatgtgggac 137  Q
    |||||||||| |||||||||||||||||| |||||||||||  ||||||| ||||||||| ||||||| ||||||    
T  10387484 tcattatcaaatatttaaaattaaataccacaatttaaacacctgctaatatgtgtgttctattttatatgggac 10387410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 2595776 - 2595866
Alignment:
Q  108 ctaatgtgtgtgttccattttatgtggg--acccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    ||||||||||||||| ||||||||||||  ||||| ||||||||||||||||||| | || |||| || ||||| |||||| ||| |||||    
T  2595776 ctaatgtgtgtgttctattttatgtgggatacccacactctattttttcaattcacacaacattagattaaagtgtaattatttggtgttt 2595866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27239062 - 27239100
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27239062 taaatttatgggaagtgatattcacgaataaaaataata 27239100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 8269207 - 8269312
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||| ||||||||||||||||||||||      |||||||||||||||        ||||||||||||||||||||||||||| | || ||||    
T  8269207 taaatttatggaaagtgatattcacgaataaaaa------taataattactattattttta--tcattatcaagtatttaaaattaaatatcgcagttta 8269298  T
Q  101 aacattgctaatgt 114  Q
    |||| | |||||||    
T  8269299 aacacttctaatgt 8269312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 12800352 - 12800405
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtg 117  Q
    ||||||||||||||||||||||||||||  ||||||||||| | ||||||||||    
T  12800352 tcattatcaagtatttaaaattaaatactgcaatttaaacactactaatgtgtg 12800405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 9815008 - 9814941
Alignment:
Q  66 attatcaagtatttaaaa-ttaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgt 132  Q
    |||||||||||||||||| ||||||||| ||||||||| | | ||||||| ||||||| |||||||||    
T  9815008 attatcaagtatttaaaaattaaataccgcaatttaaaaactactaatgtatgtgttctattttatgt 9814941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 10716933 - 10716866
Alignment:
Q  66 attatcaagtatttaaaa-ttaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgt 132  Q
    |||||||||||||||||| ||||||||| ||||||||| | | ||||||| ||||||| |||||||||    
T  10716933 attatcaagtatttaaaaattaaataccgcaatttaaaaactactaatgtatgtgttctattttatgt 10716866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 12802295 - 12802378
Alignment:
Q  114 tgtgtgttccattttatgtgggaccc-atactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| |||| |||||||||||||||| | ||||||||||||||||||| | || |||| || |||||||||||| ||| |||||    
T  12802295 tgtgagttctattttatgtgggaccccacactctattttttcaattcacacaacattagattaaagtataattacttggtgttt 12802378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10392279 - 10392241
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  10392279 taaatttatgggaagtgatattcatgaataaaaataata 10392241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 23247927 - 23247891
Alignment:
Q  3 aatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||||||||| ||||||||||||||||    
T  23247927 aatttatgggaagtgatatttacgaataaaaataata 23247891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6590202 - 6590164
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  6590202 taaatttatgggaaatgatatccacgaataaaaataata 6590164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16373255 - 16373293
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  16373255 taaatttatggaaagtgatatacacgaataaaaataata 16373293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27246735 - 27246697
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  27246735 taaatttatgagaagtgatatccacgaataaaaataata 27246697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 8269350 - 8269394
Alignment:
Q  142 actctattttttcaattcagataatattatatcaaagtataatta 186  Q
    ||||||||| ||||||||| | ||||||| |||||||||||||||    
T  8269350 actctatttattcaattcacacaatattagatcaaagtataatta 8269394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 44508463 - 44508427
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaattta 100  Q
    |||||||||| |||||||||||||||||| |||||||    
T  44508463 tcattatcaaatatttaaaattaaataccacaattta 44508427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 25496518 - 25496384
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||     
T  25496518 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactctattttttcaattcac 25496419  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | ||||||| ||||||||||||||| ||| |||||    
T  25496418 acaatattagatcaaagtataattatttggtgttt 25496384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 12797836 - 12798026
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||| ||||||||||||| |||||||||||||||      ||||||||||        ||||||||||||||||||||||||||||| |||||||    
T  12797836 taaatttataggaagtgatattctcgaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaaataccgcaattta 12797927  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga---cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||||||| |||||||||||||   |||| ||||||||||||||||||| | || |||| ||||||||||||||| ||| |||||    
T  12797928 aacactactaatgtgtgtgttctattttatgtgggacctcccacactctattttttcaattcacacaacattagatcaaagtataattatttggtgttt 12798026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 17974485 - 17974351
Alignment:
Q  64 tcattatcaa-gtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac-ccatactctattttttcaattcag 161  Q
    |||||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||     
T  17974485 tcattatcaaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacaccacactctattttttcaattcac 17974386  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| |||||||||    
T  17974385 acaacattagatcaaagtataattatttgatgttt 17974351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 18345378 - 18345512
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||| ||||||     
T  18345378 tcattattaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctatttttttaattcac 18345477  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  18345478 acaacattagatcaaagtataattacttggtgttt 18345512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 30651880 - 30652010
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| ||||  |||| ||||||||||||||||||| | ||    
T  30651880 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaa 30651979  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||| ||||||||||||||| ||| |||||    
T  30651980 cattagatcaaagtataattacttggtgttt 30652010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 17968098 - 17967964
Alignment:
Q  64 tcattatcaa-gtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcag 161  Q
    |||||||||| ||||||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||||     
T  17968098 tcattatcaaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgtgggaccccacactctatttttttaattcac 17967999  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| |||||||||    
T  17967998 acaacattagatcaaagtataattacttgatgttt 17967964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 25477423 - 25477289
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||  |||  ||| |||||||||||| |||||      
T  25477423 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtaagaccaccacactctatttttttaattcgc 25477324  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| |||||||||    
T  25477323 acaacattaaatcaaagtataattatttgatgttt 25477289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 29678585 - 29678763
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||  |||||||||||||||      ||||||||||        |||||||||| |||||||||||||||||| |||||||    
T  29678585 taaatttatgggaagtgatattttcgaataaaaataata------attactattattttta--tcattatcaaatatttaaaattaaataccgcaattta 29678676  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataatt 185  Q
    |||| | ||||||||||||||| |||||||||||||  || | ||||||||||||||||||| | || |||| |||||| |||||||    
T  29678677 aacactactaatgtgtgtgttctattttatgtgggatccctacactctattttttcaattcacacaacattagatcaaaatataatt 29678763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 9179861 - 9179726
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactcta--ttttttcaattc 159  Q
    ||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| ||||||  ||||||||||||    
T  9179861 tcattatcaagtatttaaa-ttaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttttcaattc 9179763  T
Q  160 agataatattatatcaaagtataattagttgatgttt 196  Q
    | | || |||| ||||||||||||||| ||| |||||    
T  9179762 acacaacattagatcaaagtataattacttggtgttt 9179726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 12361211 - 12361341
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagat 163  Q
    |||||||||| |||||||||||||||||| ||||||||||| | ||||||||| |  || ||||||||||| ||||| | ||||||||||||||||| |     
T  12361211 tcattatcaattatttaaaattaaataccacaatttaaacactactaatgtgtct--tctattttatgtggaacccacattctattttttcaattcacac 12361308  T
Q  164 aatattatatcaaagtataattagttgatgttt 196  Q
    || |||| ||||||||||||||| ||| |||||    
T  12361309 aacattagatcaaagtataattatttggtgttt 12361341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 40846714 - 40846622
Alignment:
Q  66 attatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaa 156  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||    
T  40846714 attatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggatccccacactctattttttcaa 40846622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 19896912 - 19897040
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    |||||||||| |||||||||||||||||| ||||||||||| | ||||  ||||||||| |||||||||||||  ||||  ||||||||||||||||||     
T  19896912 tcattatcaaatatttaaaattaaataccgcaatttaaacactactaa--tgtgtgttctattttatgtgggacccccacgctctattttttcaattcac 19897009  T
Q  162 ataatattatatcaaagtataattagttgat 192  Q
    | || ||||||||||| |||||||| |||||    
T  19897010 acaacattatatcaaaatataattacttgat 19897040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 9184552 - 9184417
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactcta--ttttttcaattc 159  Q
    ||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| ||||||  ||||||||||||    
T  9184552 tcattatcaagtatttaaa-ttaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttttcaattc 9184454  T
Q  160 agataatattatatcaaagtataattagttgatgttt 196  Q
    | | || |||| |||||||| |||||| ||| |||||    
T  9184453 acacaacattagatcaaagtttaattatttggtgttt 9184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 19891639 - 19891517
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| |  |||  ||||||||| |||||||||||||  |||| | |||||||||||||||||     
T  19891639 tcattatcaagtatttaaaattaaataccacaatttaaacactaataa--tgtgtgttctattttatgtgggactcccacattctattttttcaattcac 19891542  T
Q  162 ataatattatatcaaagtataatta 186  Q
    | || |||| |||||||||||||||    
T  19891541 acaagattagatcaaagtataatta 19891517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 15446416 - 15446319
Alignment:
Q  65 cattatcaagtatttaaaa-ttaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc-atactctattttttcaattca 160  Q
    ||||||||||||||||||| ||||||||| ||||||||||| | ||||||| ||||||| |||||||||||||||| | |||||||||||||||||||    
T  15446416 cattatcaagtatttaaaaattaaataccacaatttaaacactactaatgtatgtgttctattttatgtgggacccaacactctattttttcaattca 15446319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 24537212 - 24537059
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||| |||||||| ||||||||||||||||||||||||      ||||||||||        |||||||||||||||||||||||||||||  | ||||    
T  24537212 taaatgtatgggaaatgatattcacgaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaaataccgtagttta 24537121  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattca 160  Q
    |||| | ||||||| ||||||  |||||||||||||  |||| |||||||||||||||||||    
T  24537120 aacactactaatgtatgtgttatattttatgtgggacccccacactctattttttcaattca 24537059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 28604048 - 28604145
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacc-catactctattttttcaattca 160  Q
    ||||||||| ||||||||||||||||| | | ||||||||| || |||| |||||  || ||||||||||||||| ||||||||||||||||||||||    
T  28604048 tcattatcatgtatttaaaattaaatatcactatttaaacactgataatctgtgtaatctattttatgtgggaccgcatactctattttttcaattca 28604145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 31329024 - 31329122
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattca 160  Q
    ||||||||| ||||||||||||||||||| | ||||||||| | |||| |||| ||||| |||||| |||||||  ||| |||||||||||||||||||    
T  31329024 tcattatcatgtatttaaaattaaataccactatttaaacactactaacgtgtttgttctattttacgtgggacctccacactctattttttcaattca 31329122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 31335745 - 31335843
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattca 160  Q
    ||||||||| ||||||||||||||||||| | ||||||||| | |||| |||| ||||| |||||| |||||||  ||| |||||||||||||||||||    
T  31335745 tcattatcatgtatttaaaattaaataccactatttaaacactactaacgtgtttgttctattttacgtgggacctccacactctattttttcaattca 31335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 44630582 - 44630508
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacc 138  Q
    ||||||||| ||||||||||||||| ||| | ||||||||| | ||||||||||||||| |||||||||||||||    
T  44630582 tcattatcaggtatttaaaattaaacaccactatttaaacaatactaatgtgtgtgttctattttatgtgggacc 44630508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 20101769 - 20101650
Alignment:
Q  79 taaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataatattatatcaa 176  Q
    |||||||||||||   |||||||| | | ||||||||| ||||| ||||||||||| ||||  | ||||||||||||||||||| | || |||| |||||    
T  20101769 taaaattaaatacagtaatttaaatactactaatgtgtatgttctattttatgtggaaccccgacactctattttttcaattcacacaacattagatcaa 20101670  T
Q  177 agtataattagttgatgttt 196  Q
    |||||||||| ||| |||||    
T  20101669 agtataattacttggtgttt 20101650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 42925808 - 42925676
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    ||||||||| ||||||||||||||||| | | ||||||||| | |||||||  |||||| |||||| |||||||  ||| |||||||||||||||||||     
T  42925808 tcattatcaggtatttaaaattaaatatcactatttaaacactactaatgt--gtgttctattttacgtgggacctccacactctattttttcaattcac 42925711  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || | || |||||||| |||||| ||| |||||    
T  42925710 acaacactagatcaaagtttaattacttggtgttt 42925676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 25637898 - 25637801
Alignment:
Q  64 tcattatcaagtatttaaaa-ttaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccata--ctctattttttcaattca 160  Q
    |||||||||||||||||||| ||||||||| || |||||||| | |||||||||||  || ||||||||||||||||| |  ||||| ||||||||||||    
T  25637898 tcattatcaagtatttaaaaattaaataccgcagtttaaacactactaatgtgtgt--tctattttatgtgggacccacaatctctaatttttcaattca 25637801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 1934092 - 1934009
Alignment:
Q  115 gtgtgttccattttatgtgggacc--catactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||||||| |||||||||||||||  |  ||||||||||||||||||| | || |||| ||||||||||||||| ||| |||||    
T  1934092 gtgtgttctattttatgtgggacctccccactctattttttcaattcacacaacattagatcaaagtataattacttggtgttt 1934009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12002094 - 12002056
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  12002094 taaatttatgggaagtgatatccacgaataaaaataata 12002056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 34495240 - 34495183
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgtt 121  Q
    ||||||||||||||||||||||||||||  ||||||||||| |  |||| ||||||||    
T  34495240 tcattatcaagtatttaaaattaaatactgcaatttaaacactaataatatgtgtgtt 34495183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40846771 - 40846735
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataa 37  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  40846771 taaatttataggaagtgatattcacaaataaaaataa 40846735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 37537072 - 37536937
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgcta--atgtgtgtgttccattttatgtggga-cccatactctattttttcaattca 160  Q
    ||||||||||||||||||||||||||||| ||||||||||| | |||  |||||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  37537072 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgtgttctattttatgtgggaccccacactctattttttcaattca 37536973  T
Q  161 gataatattatatcaaagtataattagttgatgttt 196  Q
     | || |||||||||||||||||||| |||||||||    
T  37536972 cacaacattatatcaaagtataattacttgatgttt 37536937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 6154566 - 6154432
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  6154566 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 6154467  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| |||||| |||||||| |||||||||    
T  6154466 acaacattagatcaaaatataattacttgatgttt 6154432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 26668240 - 26668374
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  26668240 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 26668339  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  26668340 acaacattagatcaaagtataattatttggtgttt 26668374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 26939837 - 26939971
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  26939837 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 26939936  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  26939937 acaacattagatcaaagtataattatttggtgttt 26939971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 29167107 - 29166973
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacc--catactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||| |||||  || |||||||||||||||||||     
T  29167107 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtaggaccctcacactctattttttcaattcac 29167008  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  29167007 acaacattaaatcaaagtataattacttggtgttt 29166973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 37247933 - 37247799
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| ||||  |||| |||||||||||||||||||     
T  37247933 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcac 37247834  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  37247833 acaacattagatcaaagtataattacttggtgttt 37247799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 7452717 - 7452841
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  7452717 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 7452816  T
Q  162 ataatattatatcaaagtataatta 186  Q
    | || |||| |||| ||||||||||    
T  7452817 acaacattagatcagagtataatta 7452841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 37646191 - 37646055
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgcta--atgtgtgtgttccattttatgtggga--cccatactctattttttcaattc 159  Q
    ||||||||||||||||||||||||||||| ||||||||||| |  ||  |||||||||||| |||||||||||||  |||| ||||||||||||||||||    
T  37646191 tcattatcaagtatttaaaattaaataccacaatttaaacactaataatatgtgtgtgttctattttatgtgggacccccacactctattttttcaattc 37646092  T
Q  160 agataatattatatcaaagtataattagttgatgttt 196  Q
    | | || |||| ||||||||||||||| |||||||||    
T  37646091 acacaacattagatcaaagtataattacttgatgttt 37646055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 40148805 - 40148897
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaa 156  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  40148805 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtttgttctattttatgtgggacccacactctattttttcaa 40148897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 12104016 - 12104091
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc 139  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  12104016 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttccattttatgtgggaccc 12104091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 36424600 - 36424734
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    |||||| |||||||||||||||||||||| |||||||| || | ||||||||||||||| |||||||||| ||  |||| |||||||||||||||||||     
T  36424600 tcattaccaagtatttaaaattaaataccacaatttaagcactactaatgtgtgtgttctattttatgtgagacccccacactctattttttcaattcac 36424699  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| |||| |||||||||| ||| |||||    
T  36424700 acaacattagatcatagtataattacttggtgttt 36424734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 10759495 - 10759371
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||  ||||||||||| | ||||||||| ||||| ||||||||||||||||  | |||||||||||| ||||||     
T  10759495 tcattatcaagtatttaaaattaaatactgcaatttaaacactactaatgtgtctgttctattttatgtgggacccctacactctatttttttaattcac 10759396  T
Q  162 ataatattatatcaaagtataatta 186  Q
    | || |||| |||||| ||||||||    
T  10759395 acaacattaaatcaaaatataatta 10759371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 35679032 - 35678898
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcag 161  Q
    ||||||||| ||||||||||| ||||||| | ||||||||| | ||||||||||||||| |||||||||||||| |  | |||||||||||||||||||     
T  35679032 tcattatcaggtatttaaaataaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggactcttacactctattttttcaattcac 35678933  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || | || |||||||| |||||| |||||||||    
T  35678932 acaacactagatcaaagtttaattacttgatgttt 35678898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 36430480 - 36430604
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    |||||| ||| ||||||||||||||||||  |||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  36430480 tcattaccaaatatttaaaattaaataccataatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 36430579  T
Q  162 ataatattatatcaaagtataatta 186  Q
    | || |||| || ||| ||||||||    
T  36430580 acaacattagattaaaatataatta 36430604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 20180339 - 20180155
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||| ||||||||||||| |||||||||||||||      ||||||||||        ||||||||||   ||||||||||||||||  ||||||    
T  20180339 taaatttataggaagtgatattctcgaataaaaataata------attactattattttta--tcattatcaa---tttaaaattaaataccgtaattta 20180251  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||||||| |||||||||||| |||| |  ||||||| |||||||| | || |||| || |||||||||||| ||| |||||    
T  20180250 aacactactaatgtgtgtgttctattttatgtgggtcccacatcctattttctcaattcacacaacattagattaaagtataattacttggtgttt 20180155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 17162818 - 17162917
Alignment:
Q  64 tcattatcaagtatttaaaa-ttaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattca 160  Q
    ||||||||| |||||||||| |||||||||||||||||||||   ||||||||||||||| |||||||||||||  |||| | |||||||||||||||||    
T  17162818 tcattatcaggtatttaaaaattaaatacctcaatttaaacaccactaatgtgtgtgttctattttatgtgggactcccacattctattttttcaattca 17162917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 17159338 - 17159437
Alignment:
Q  64 tcattatcaagtatttaaaa-ttaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggg--acccatactctattttttcaattca 160  Q
    ||||||||| |||||||||| ||||||||||||||| ||||| | ||||||||||| ||| ||||||||||||  ||||| | |||||||||||||||||    
T  17159338 tcattatcaggtatttaaaaattaaatacctcaattaaaacactactaatgtgtgtcttctattttatgtgggacacccacattctattttttcaattca 17159437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 6511726 - 6511614
Alignment:
Q  75 tatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattata 172  Q
    |||||||||||||||||  ||||||||||| | |||||||||| |||| |||||||||||||  |||| |||  |||||||||||||| | || |||| |    
T  6511726 tatttaaaattaaatactgcaatttaaacactactaatgtgtgagttctattttatgtgggactcccacacttaattttttcaattcacacaacattaga 6511627  T
Q  173 tcaaagtataatt 185  Q
    ||||| |||||||    
T  6511626 tcaaaatataatt 6511614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 16115363 - 16115294
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtg 133  Q
    |||||| |||||||||||||||||| |||  |||||||||||| |||||||||||||| |||||||||||    
T  16115363 tcattagcaagtatttaaaattaaacaccgtaatttaaacattactaatgtgtgtgtttcattttatgtg 16115294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 23689034 - 23689128
Alignment:
Q  65 cattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaat 157  Q
    |||||| | ||||||||||||||||||| |||||| |||| | | ||||||||||||| |||||||||||||  |||| |||| |||||||||||    
T  23689034 cattataaggtatttaaaattaaataccacaattttaacactacgaatgtgtgtgttctattttatgtgggatccccacactcaattttttcaat 23689128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 39519361 - 39519481
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||          ||||||||||| |||||||| |||||||  | ||||||||||||||||||| | ||    
T  39519361 tatcaagtatttaaaattaaataccacaatttaa----------tgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaa 39519450  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||| ||||||||||| ||| ||| |||||    
T  39519451 cattagatcaaagtatatttacttggtgttt 39519481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 23757253 - 23757164
Alignment:
Q  109 taatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||||||||||||| ||||| ||||||||||  | ||||||||||||||||||| | || |||| ||| ||||||||||| ||| |||||    
T  23757253 taatgtgtgtgttctattttgtgtgggacccccacactctattttttcaattcacacaacattaaatctaagtataattacttggtgttt 23757164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 23822709 - 23822620
Alignment:
Q  109 taatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||||||||||||| ||||| ||||||||||  | ||||||||||||||||||| | || |||| ||| ||||||||||| ||| |||||    
T  23822709 taatgtgtgtgttctattttgtgtgggacccccacactctattttttcaattcacacaacattaaatctaagtataattacttggtgttt 23822620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 4872854 - 4872942
Alignment:
Q  74 gtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattca 160  Q
    ||||||||||||||||| | | ||||||||| | ||| ||||||||||| ||||||| ||| |  |||| |||||||||||||||||||    
T  4872854 gtatttaaaattaaatatcactatttaaacactactattgtgtgtgttctattttatatggaacccccacactctattttttcaattca 4872942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 39524000 - 39524120
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||          ||||||||||| ||||||||  ||||||  | ||||||||||||||||||| | ||    
T  39524000 tatcaagtatttaaaattaaataccacaatttaa----------tgtgtgtgttctattttatgctggacccccacactctattttttcaattcacacaa 39524089  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||| ||||||||||| ||| ||| |||||    
T  39524090 cattagatcaaagtatatttatttggtgttt 39524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16115417 - 16115381
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataa 37  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  16115417 taaatttatgggaagtgatatccacgaatataaataa 16115381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 40567725 - 40567661
Alignment:
Q  75 tatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc 139  Q
    |||||||||||||||||| |||||||| || | |||| |||||||||  ||||||| ||| ||||    
T  40567725 tatttaaaattaaataccacaatttaatcactactaacgtgtgtgttttattttatatggtaccc 40567661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 8694675 - 8694809
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  8694675 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 8694774  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  8694775 acaacattagatcaaagtataattacttggtgttt 8694809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 55252606 - 55252741
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactcta-ttttttcaattca 160  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||  ||| |||||| |||||||||||||    
T  55252606 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggaccaccacactctatttttttcaattca 55252705  T
Q  161 gataatattatatcaaagtataattagttgatgttt 196  Q
     | || |||| ||||||||||||||| |||||||||    
T  55252706 cacaacattaaatcaaagtataattacttgatgttt 55252741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 16421953 - 16422142
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||| ||||||||||| |||||||||||||||      ||||||||||        ||||||||||||||| ||||||||||||| |||||||    
T  16421953 taaatttatggaaagtgatattctcgaataaaaataata------attactattattttta--tcattatcaagtattgaaaattaaataccgcaattta 16422044  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | |||||| |||||||| |||||||||||||  |||| ||||||||||||||||||| | || |||| ||||||||||||||| ||| |||||    
T  16422045 aacactactaatgcgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgttt 16422142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 31728499 - 31728366
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcaga 162  Q
    ||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |    
T  31728499 tcattatgaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggaccccacactctattttttcaattcaca 31728400  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
     || |||| |||||| |||||||| ||| |||||    
T  31728399 caacattagatcaaattataattacttggtgttt 31728366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 12823097 - 12822907
Alignment:
Q  3 aatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaatttaaa 102  Q
    |||||||||||||||||||||  ||||||||||||||      ||||||||||        ||||||| ||||||||||||||||||||| || ||||||    
T  12823097 aatttatgggaagtgatattctggaataaaaataata------attactattattttta--tcattataaagtatttaaaattaaataccacagtttaaa 12823006  T
Q  103 cattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgtttgat 199  Q
    || | |||||||||| |||| |||||||||||||  |||| ||||||||||||||||||| | || |||| ||||||||||||||| ||| ||||||||    
T  12823005 cactactaatgtgtgagttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattatttggtgtttgat 12822907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 37263693 - 37263563
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| ||||  |||| ||||||||||||||||||| | ||    
T  37263693 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaa 37263594  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||| ||||||||||||||| ||| |||||    
T  37263593 cattagatcaaagtataattacttggtgttt 37263563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 13064994 - 13064823
Alignment:
Q  6 ttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaatttaaacat 105  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||        ||||||||||||||||||||||||||||| |||||||||||     
T  13064994 ttatgggaagtgatattcacgaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaaataccgcaatttaaacac 13064903  T
Q  106 tgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataatta 186  Q
    |  | |||||||||||| |||||||||||||  |||| |||||||||||||||||||   || |||| |||||||||||||||    
T  13064902 tattgatgtgtgtgttctattttatgtgggacccccacactctattttttcaattca---aacattagatcaaagtataatta 13064823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 196
Target Start/End: Original strand, 31274482 - 31274610
Alignment:
Q  70 tcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataata 167  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| ||||  |||| ||||||||||||||||||| | || |    
T  31274482 tcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaaca 31274581  T
Q  168 ttatatcaaagtataattagttgatgttt 196  Q
    ||| ||||||||||||||| ||| |||||    
T  31274582 ttagatcaaagtataattacttggtgttt 31274610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 33468136 - 33468003
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggg-acccatactctattttttcaattcaga 162  Q
    ||||||||||||||||||||||||||||  ||||||||||| | ||||||||||||||| |||||||||||| ||| | ||||||||||||||||| | |    
T  33468136 tcattatcaagtatttaaaattaaatactacaatttaaacactactaatgtgtgtgttctattttatgtgggaacctacactctattttttcaatttaca 33468037  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
     || |||| ||||||||||||||| ||| |||||    
T  33468036 caacattagatcaaagtataattacttggtgttt 33468003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 51698833 - 51699025
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||| ||||||||||| ||||||||||      ||||||||||||||         ||||||||||| ||||||||||||||||| |||||||    
T  51698833 taaatttatggaaagtgatattctcgaataaaaaa-----taataattactattttttttttatcattatcaagcatttaaaattaaataccgcaattta 51698927  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||   || ||||  |||||||||||||| ||| |||||    
T  51698928 aacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacgcaacattagttcaaagtataattatttggtgttt 51699025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29349396 - 29349242
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    |||||||||||||| |||||||||||||||||||      ||||||||| |||||        |||||||| |||||||||||||||||||| |||||||    
T  29349396 taaatttatgggaaatgatattcacgaataaaaaa-----taataattaatattatttttta-tcattatccagtatttaaaattaaataccgcaattta 29349303  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggacc-catactctattttttcaattca 160  Q
    |||| |||||||||||| |||| ||||||||||||||| || |||||||||||||||||||    
T  29349302 aacactgctaatgtgtgagttctattttatgtgggacctcacactctattttttcaattca 29349242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 5270557 - 5270423
Alignment:
Q  64 tcattatcaa-gtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcag 161  Q
    |||||||||| ||||||||||||||||||| ||||||||| | | ||||||||||||||| ||||||||||||| |||| | |||||||||||||||||     
T  5270557 tcattatcaaagtatttaaaattaaataccacaatttaaatactactaatgtgtgtgttctattttatgtgggaccccacattctattttttcaattcac 5270458  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  5270457 acaacattagatcaaagtataattacttggtgttt 5270423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 37258993 - 37258879
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| ||||  |||| ||||||||||||||||||| | ||    
T  37258993 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaa 37258894  T
Q  166 tattatatcaaagta 180  Q
     |||| |||||||||    
T  37258893 cattagatcaaagta 37258879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 2820700 - 2820852
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||||| |||||||||||||      ||||||||||        |||||||||| || ||||||||||||||| |||||||    
T  2820700 taaatttatgggaagtgatattcac-aataaaaataata------attactattattttta--tcattatcaaataattaaaattaaataccgcaattta 2820790  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattca 160  Q
    |||| | ||||||||||||||| |||||||||||||  |||| |||||| ||||||||||||    
T  2820791 aacactactaatgtgtgtgttctattttatgtgggacccccacactctaatttttcaattca 2820852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 13060428 - 13060553
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactcta-ttttttcaattca 160  Q
    ||||||||||||||||||||||||||||| ||||||||||| | | |||||||| ||||  ||||||||| |||  ||| |||||| |||||||||||||    
T  13060428 tcattatcaagtatttaaaattaaataccgcaatttaaacactaccaatgtgtgagttcttttttatgtgtgaccaccacactctatttttttcaattca 13060527  T
Q  161 gataatattatatcaaagtataatta 186  Q
     | ||||||| |||||||||||||||    
T  13060528 cacaatattagatcaaagtataatta 13060553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 32081354 - 32081201
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||| |||||||||||||||      ||||||||||        | ||||||||||||||||||||||||| | |||||||    
T  32081354 taaatttatgggaagtgatattctcgaataaaaataata------attactattattttta--taattatcaagtatttaaaattaaatatcacaattta 32081263  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattca 160  Q
    |||| | |||||||||| |||| |||||| |||||||  ||| |||||||||||||||||||    
T  32081262 aacactactaatgtgtgagttctattttacgtgggacctccacactctattttttcaattca 32081201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 19107540 - 19107663
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    ||||||||| ||||||||||||||||||| | ||||||||| | ||||||||||||||| ||||||||||||||  ||| ||||||| |||||||||||     
T  19107540 tcattatcaggtatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactctatattttcaattcac 19107639  T
Q  162 ataata-ttatatcaaagtataat 184  Q
    | |||| ||| |||||||| ||||    
T  19107640 acaatacttagatcaaagtttaat 19107663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 5925929 - 5925814
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagat 163  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||  |||||| ||||||||||||||||     | |||||||||||||| |     
T  5925929 tcattatcaagtatttaaaattaaataccataatttaaacactactaatgt--gtgttctattttatgtgggaccc-----ccattttttcaattcacac 5925837  T
Q  164 aatattatatcaaagtataatta 186  Q
    || ||||||||||||||||||||    
T  5925836 aacattatatcaaagtataatta 5925814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19907155 - 19907268
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    |||||||||||||||||||||||||||||||||||||||      ||| ||||||        |||| |||||||||||||||||||||||| |||||||    
T  19907155 taaatttatgggaagtgatattcacgaataaaaataata------atttctattattttta--tcatcatcaagtatttaaaattaaataccgcaattta 19907246  T
Q  101 aacattgctaatgtgtgtgttc 122  Q
    |||| |||||||||||||||||    
T  19907247 aacactgctaatgtgtgtgttc 19907268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 32220698 - 32220574
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    |||||||||| |||||||||||||||| |  |||||||||| |  |||||||| ||||| |||||||||||||  |||| |||||||||||| ||||||     
T  32220698 tcattatcaaatatttaaaattaaatatcggaatttaaacactaataatgtgtatgttctattttatgtgggacccccacactctatttttttaattcac 32220599  T
Q  162 ataatattatatcaaagtataatta 186  Q
    | ||||||| |||||| ||||||||    
T  32220598 acaatattagatcaaaatataatta 32220574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 6943684 - 6943819
Alignment:
Q  4 atttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnct--cattatcaagtatttaaaattaaatacctcaatttaa 101  Q
    |||||||||||||||||||||| ||||||||||||| | |  | ||||||||        |  ||||||||||||||| |||||||||||  ||||||||    
T  6943684 atttatgggaagtgatattcaccaataaaaataataattactactactattatttttttttatcattatcaagtatttgaaattaaatacagcaatttaa 6943783  T
Q  102 acattgctaatgtgtgtgttccattttatgtgggac 137  Q
    ||||| ||||||| ||||||| ||||||||||||||    
T  6943784 acattactaatgtatgtgttctattttatgtgggac 6943819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 19102928 - 19103026
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattca 160  Q
    ||||||||| ||||||||||||||||| | | ||||||||| |  |||||||||||||| ||||||||||||||  ||| |||||||||||||||||||    
T  19102928 tcattatcaggtatttaaaattaaatatcactatttaaacactattaatgtgtgtgttctattttatgtgggacctccacactctattttttcaattca 19103026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 19907269 - 19907384
Alignment:
Q  82 aattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagta 180  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||||||||| || |||| ||| ||||||||||||||| | || | || |||||| ||    
T  19907269 aattaaataccgcaatttaaacactgctaatgtgtgtgttctattttatgtgagaccccacactttattttttcaattcacacaacactagatcaaaata 19907368  T
Q  181 taattagttgatgttt 196  Q
    |||||| ||| |||||    
T  19907369 taattacttggtgttt 19907384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 27183197 - 27183311
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagat 163  Q
    |||||||||||||||||||||||||||||  |||||||||| | ||||  ||||||||| ||||||||||||||||  |      |||||||||||| |     
T  27183197 tcattatcaagtatttaaaattaaataccataatttaaacactactaa--tgtgtgttctattttatgtgggaccccca------tttttcaattcacac 27183288  T
Q  164 aatattatatcaaagtataatta 186  Q
    || ||||||||||||||||||||    
T  27183289 aacattatatcaaagtataatta 27183311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 8029457 - 8029335
Alignment:
Q  72 aagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataatatt 169  Q
    ||||||||||||||||||||| | || |||||| ||    ||||||||||| ||||||||||||||||  | ||||||||||||||||||| | |||| |    
T  8029457 aagtatttaaaattaaataccactatgtaaacactg----tgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaatact 8029362  T
Q  170 atatcaaagtataattagttgatgttt 196  Q
    | |||||||| |||||| ||| |||||    
T  8029361 agatcaaagtttaattacttggtgttt 8029335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 23094071 - 23094167
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattca 160  Q
    ||||||||||||||||||||||||||  |  ||||||| || | ||||||||||||||  |||||||||||  ||||  ||||||||||||||||||    
T  23094071 tcattatcaagtatttaaaattaaatctcgtaatttaatcactactaatgtgtgtgttttattttatgtggaccccactctctattttttcaattca 23094167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 33462488 - 33462358
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||| ||  ||||||||||| | ||||||||||| ||  ||||||| ||||||  ||| |||||||||||||||||||     
T  33462488 tcattatcaagtatttaaaattaaacactgcaatttaaacactactaatgtgtgtctt--attttat-tgggacctccacactctattttttcaattcac 33462392  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| |||||| |||||||| ||| |||||    
T  33462391 acaacattagatcaaa-tataattatttggtgttt 33462358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 40408913 - 40409028
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagataata 167  Q
    |||||| |||||||||||||||||| ||||||||||| |  |||| ||||||||| ||||||| ||| ||||  || ||||||||| |||||| | || |    
T  40408913 tatcaaatatttaaaattaaataccgcaatttaaacactaataatatgtgtgttctattttatttggtaccc-cacactatttttttaattcatacaaca 40409011  T
Q  168 ttatatcaaagtataat 184  Q
    ||| |||||||||||||    
T  40409012 ttagatcaaagtataat 40409028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 12875366 - 12875464
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattca 160  Q
    |||||||||| |||||||||| ||||||| | ||||||| ||| |||||||||| |||| ||||||||  ||||||  | |||||||||||||||||||    
T  12875366 tcattatcaaatatttaaaatcaaataccactatttaaatattactaatgtgtgggttctattttatgcaggacccccacactctattttttcaattca 12875464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 31766834 - 31766909
Alignment:
Q  64 tcattatcaagtatttaaaa-ttaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc 139  Q
    |||||||||||||||||||| ||||||||| |||||||| || |  |||||||||||||| ||||||||||||||||    
T  31766834 tcattatcaagtatttaaaaattaaataccacaatttaa-cactattaatgtgtgtgttctattttatgtgggaccc 31766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 47245103 - 47245205
Alignment:
Q  75 tatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagataatattatatc 174  Q
    |||||||||||||||| | | ||||||||| |  |||||||||||||| ||||||| | ||| ||  || |||||||||||||||| | |||| || |||    
T  47245103 tatttaaaattaaatatcgctatttaaacactaataatgtgtgtgttctattttatttaggatccccacactattttttcaattcacacaatactagatc 47245202  T
Q  175 aaa 177  Q
    |||    
T  47245203 aaa 47245205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 48275970 - 48275875
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgg-gacccatactctattttttcaattca 160  Q
    ||||||| |||||||||||| |||||||| | ||||||||| |||||  |||||||||  ||||||| |||   |||| |||||||||||||||||||    
T  48275970 tcattattaagtatttaaaaataaataccactatttaaacactgcta--gtgtgtgttatattttatatggacccccacactctattttttcaattca 48275875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 8028271 - 8028215
Alignment:
Q  75 tatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatg 131  Q
    |||||||||||||||||  | ||||||||| | ||||||||||||||| ||||||||    
T  8028271 tatttaaaattaaatacaactatttaaacactactaatgtgtgtgttctattttatg 8028215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 12878864 - 12878961
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattca 160  Q
    ||||||||||||||||| ||| ||||| |   ||||||||| |  |||||||| ||||| |||||||||||||  | | ||||||||||||||||||||    
T  12878864 tcattatcaagtatttataat-aaatatcattatttaaacactattaatgtgtatgttctattttatgtgggatcctcttactctattttttcaattca 12878961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39216287 - 39216249
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  39216287 taaatttatgcgaagtgatatacacgaataaaaataata 39216249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40408849 - 40408887
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  40408849 taaatgtatgggaagtgatattcactaataaaaataata 40408887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 10136287 - 10136421
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  10136287 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 10136386  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  10136387 acaacattagatcaaagtataattacttggtgttt 10136421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 16648764 - 16648639
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc---atactctattttttcaattca 160  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||   | ||||||||||||||||| |    
T  16648764 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggaccccctacactctattttttcaattta 16648665  T
Q  161 gataatattatatcaaagtataatta 186  Q
     | || |||| |||||||||||||||    
T  16648664 cacaacattagatcaaagtataatta 16648639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 25844722 - 25844852
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| ||||  |||| ||||||||||||||||||| | ||    
T  25844722 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaa 25844821  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||| ||||||||||||||| ||| |||||    
T  25844822 cattagatcaaagtataattacttggtgttt 25844852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 51040655 - 51040522
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||| |||| ||||||||  |||| ||| |||||||||||||||     
T  51040655 tcattatcaagtatttaaaattaaataacacaatttaaacactactaatgtgtgtgttctatttcatgtgggactcccacactttattttttcaattcac 51040556  T
Q  162 ataatattatatcaaagtataattagttgatgtt 195  Q
    | || |||| ||||||||||||||| ||| ||||    
T  51040555 acaacattagatcaaagtataattacttggtgtt 51040522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 11807181 - 11807279
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattca 160  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |   ||  |||||||||||||||||||    
T  11807181 tcattatcaagtatttaaatttaaataccacaatttaaacactgctaatgtgtgtgttctattttatgtggaatctccgcactctattttttcaattca 11807279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 16036568 - 16036666
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattca 160  Q
    ||||||||| ||||||||| ||||||||| | ||||||||| | ||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||    
T  16036568 tcattatcaggtatttaaatttaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactctattttttcaattca 16036666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 38622151 - 38622281
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||| ||||| ||||||  || |||||||| | ||||| |||| |||| |||||||||||||  |||| |||||||||||||||||||     
T  38622151 tcattatcaagtattcaaaatcaaatactgcattttaaacactactaatatgtgagttctattttatgtgggactcccacactctattttttcaattcac 38622250  T
Q  162 ataatattatatcaaagtataattagttgat 192  Q
    | || |||| ||||||||||||||| |||||    
T  38622251 acaacattagatcaaagtataattacttgat 38622281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 12260938 - 12261028
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctatttttt 153  Q
    ||||||||||||||||||||||||||||| | ||||||||| | |||||| |||||||| ||||||||||||| |||| ||||||||||||    
T  12260938 tcattatcaagtatttaaaattaaataccactatttaaacactactaatgagtgtgttctattttatgtgggaccccacactctatttttt 12261028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 8138602 - 8138678
Alignment:
Q  111 atgtgtgtgttccattttatgtgggaccc-atactctattttttcaattcagataatattatatcaaagtataatta 186  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  8138602 atgtgtgtgttctattttatgtgtgacccgatactctattttttcaattcacacaatattatatcaaagtataatta 8138678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 23191971 - 23191875
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattca 160  Q
    ||||||||| ||||||||||||||||||| | | ||||||| | ||||||||||||||| ||||||||||   |||| |||||||||||||||||||    
T  23191971 tcattatcaggtatttaaaattaaataccactacttaaacactactaatgtgtgtgttctattttatgtgacccccacactctattttttcaattca 23191875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 46697309 - 46697399
Alignment:
Q  96 atttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagataatattatatcaaagtataatta 186  Q
    ||||||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||||||| | || | || |||||||| ||||||    
T  46697309 atttaaacattactaatgtatgtgttatattttatgtgggacccatactctattttttcaattcacacaacactaaatcaaagtctaatta 46697399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 19798129 - 19798054
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc 139  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||| || | |||| ||||||||||||||||    
T  19798129 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatgcgagttctattttatgtgggaccc 19798054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 40166902 - 40167024
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatac--tctattttttcaattcag 161  Q
    ||||||||| ||||||||||||||||||| |  |||||||| | || |||||||| ||| ||||||| |||||||| |||  |||||||||||||||||     
T  40166902 tcattatcaggtatttaaaattaaataccactgtttaaacactactgatgtgtgtcttctattttatttgggacccctacattctattttttcaattcac 40167001  T
Q  162 ataatattatatcaaagtataat 184  Q
    | |||| || |||||||| ||||    
T  40167002 acaatactagatcaaagtttaat 40167024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 26926854 - 26926780
Alignment:
Q  64 tcattatcaagtatttaaaa-ttaaatacctcaatttaaa-cattgctaatgtgtgtgttccattttatgtggga 136  Q
    |||||||||||||||||||| ||||||||| ||||||||| || | ||||||||||||||| |||||||||||||    
T  26926854 tcattatcaagtatttaaaaattaaataccacaatttaaaacactactaatgtgtgtgttctattttatgtggga 26926780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10141001 - 10141095
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||| |||||||||       |||||||||||||||        ||||||||||||||||||||||||||||| |||||||    
T  10141001 taaatttatgggaagtgatattctcgaataaaa-------taataattactattattttta--tcattatcaagtatttaaaattaaataccacaattta 10141091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8138540 - 8138578
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8138540 taaatttatgggaagtgatattcacgaataaaaataata 8138578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 39199905 - 39199805
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacat----tgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaat 157  Q
    ||||||| |||||||||||| |||||||  |||||||||||     |  |||||||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  39199905 tcattattaagtatttaaaagtaaatactgcaatttaaacacacactattaatgtgtgtgttctattttatgtgggacctccacactctattttttcaat 39199806  T
Q  158 t 158  Q
    |    
T  39199805 t 39199805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 47450375 - 47450287
Alignment:
Q  8 atgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaatttaaaca 104  Q
    |||| ||||||||||| ||||||||||||||| |||| |||| | |||        ||||||||||||||||||||||||||| | || ||||||||    
T  47450375 atggaaagtgatattctcgaataaaaataataataattattattttta--------tcattatcaagtatttaaaattaaataacgcagtttaaaca 47450287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33300450 - 33300412
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  33300450 taaatttatgagaattgatattcacgaataaaaataata 33300412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 38621619 - 38621657
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  38621619 taaatttatgggaagtgatattctcaaataaaaataata 38621657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19798184 - 19798147
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataat 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  19798184 taaatttatgggaagtgatattctcaaataaaaataat 19798147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 38181471 - 38181282
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||| ||||| |||||||||||||||      ||||||||||        ||||||||||||||||||||||||||||| |||||||    
T  38181471 taaatttatgggaagtggtattctcgaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaaataccgcaattta 38181380  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||||||| |||||||||||||  | || ||| ||||||||||||||| | || |||| ||||||||||||||| |||||||||    
T  38181379 aacactactaatgtgtgtgttctattttatgtgggactctcacactttattttttcaattcacacaacattagatcaaagtataattacttgatgttt 38181282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 15950764 - 15950582
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnc-tcattatcaagtatttaaaattaaatacctcaattt 99  Q
    ||||| ||||||||||||||||| |||||||||||||||      ||||||||||       | ||||||||||||||||||||||||||||| ||||||    
T  15950764 taaatatatgggaagtgatattctcgaataaaaataata------attactattatttttatcatcattatcaagtatttaaaattaaataccgcaattt 15950671  T
Q  100 aaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcagataatattatatcaaagtataatta 186  Q
    ||||| |  |||||||||||||| ||||||||||| ||  ||| ||||||||||||||||||| | || |||| |||||||||||||||    
T  15950670 aaacactattaatgtgtgtgttctattttatgtggcacctccacactctattttttcaattcacacaacattagatcaaagtataatta 15950582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 2966492 - 2966681
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||| |||||||||||||||||||||||||||||      |||||||| |        ||||||| ||||||||||||||||||||| |||||||    
T  2966492 taaatttataggaagtgatattcacgaataaaaataata------attactataattttta--tcattattaagtatttaaaattaaataccgcaattta 2966583  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggacc--catactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||||||| ||||||| |||||||  || ||||||||||||||||||  |||| |||| || ||| |||||||| |||||||||    
T  2966584 aacactactaatgtgtgtgttctattttatatgggaccctcacactctattttttcaattcccataacattagataaaaatataattatttgatgttt 2966681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 1808413 - 1808546
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcaga 162  Q
    |||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||| ||||| |||| ||| ||||||||||||||| |    
T  1808413 tcattatcaaatatttaaaattaaataccgcaatttaaacacttctaatgtgtgtgttctattttatatgggaccccacactatattttttcaattcaca 1808512  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
     || |||| ||||||||||||||| ||| |||||    
T  1808513 caacattagatcaaagtataattacttggtgttt 1808546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 44925055 - 44924932
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||| ||||||||||||||  ||| |||||| ||||||||||||     
T  44925055 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgttttctattttatgtgggacctccaaactctaatttttcaattcac 44924956  T
Q  162 ataatattatatcaaagtataatt 185  Q
    | || |||| ||||||||||||||    
T  44924955 acaagattagatcaaagtataatt 44924932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 33417492 - 33417590
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccat--actctattttttcaattca 160  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||| |||||||  |||||||||||||||||||    
T  33417492 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgagacccatacactctattttttcaattca 33417590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 40125024 - 40124894
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| ||||  |||| ||||||||||||||||||| | ||    
T  40125024 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaa 40124925  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||| ||||||||||| ||| ||| |||||    
T  40124924 cattagatcaaagtatatttacttggtgttt 40124894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 1910081 - 1909947
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| |  |||||||| | |||||||||| | || |||| |||||||||  ||| |||||||||||||||||||     
T  1910081 tcattatcaagtatttaaaattaaataccactgtttaaacactactaatgtgtgagctctatttcatgtgggacatccacactctattttttcaattcac 1909982  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  1909981 acaacattagatcaaagtataattacttggtgttt 1909947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 17021243 - 17021348
Alignment:
Q  89 tacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagtataattag 187  Q
    |||| ||||||||||| | ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| | || |||| |||||||||||||||     
T  17021243 taccgcaatttaaacactactaatgtgtgtgttctattttatgtgggaccccacactctattttttcaattcacacaacattagatcaaagtataattac 17021342  T
Q  188 ttgatg 193  Q
    ||||||    
T  17021343 ttgatg 17021348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 17551680 - 17551785
Alignment:
Q  89 tacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagtataattag 187  Q
    |||| ||||||||||| | ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| | || |||| |||||||||||||||     
T  17551680 taccgcaatttaaacactactaatgtgtgtgttctattttatgtgggaccccacactctattttttcaattcacacaacattagatcaaagtataattac 17551779  T
Q  188 ttgatg 193  Q
    ||||||    
T  17551780 ttgatg 17551785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 18875519 - 18875395
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||| ||| ||||||||||||  | || ||||||||||||||||     
T  18875519 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatgtgtgttctattgtatgtgggacccctacacactattttttcaattcac 18875420  T
Q  162 ataatattatatcaaagtataatta 186  Q
    | || |||| |||||| | ||||||    
T  18875419 acaacattagatcaaaatttaatta 18875395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 26780066 - 26780139
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac 137  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||    
T  26780066 tcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggac 26780139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 28559250 - 28559158
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttc 154  Q
    |||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||  ||| |||||||||||||    
T  28559250 tcattatcaaatatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactctattttttc 28559158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 28564429 - 28564309
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagat 163  Q
    |||||||||| ||||||||||||||||||  |||||||||| | ||||||||||||||| ||||||||||| |||   || |||||||||||||  | |     
T  28564429 tcattatcaaatatttaaaattaaataccgtaatttaaacactactaatgtgtgtgttctattttatgtggaacctccacactattttttcaatgtacac 28564330  T
Q  164 aatattatatcaaagtataat 184  Q
    || |||| |||||||||||||    
T  28564329 aacattagatcaaagtataat 28564309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 7002623 - 7002741
Alignment:
Q  80 aaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaa 177  Q
    ||||||||||||| ||||||||||| | ||||||| ||| ||| |||||||||| ||  |||| ||||||||||||||||||| | |||| || ||||||    
T  7002623 aaaattaaataccacaatttaaacactactaatgtatgtattctattttatgtgagatccccacactctattttttcaattcacacaatactagatcaaa 7002722  T
Q  178 gtataattagttgatgttt 196  Q
    || |||||| ||| |||||    
T  7002723 gtctaattacttggtgttt 7002741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 23547738 - 23547700
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaa 102  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  23547738 tcattatcaagtatttaaaattaaataccgcaatttaaa 23547700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19168672 - 19168710
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  19168672 taaatttatgggaagtgatattctagaataaaaataata 19168710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22714187 - 22714149
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  22714187 taaatttatgggaagtgatatccatgaataaaaataata 22714149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44925110 - 44925072
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  44925110 taaatttatgggaaatgatattctcgaataaaaataata 44925072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 17953267 - 17953183
Alignment:
Q  76 atttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc-atactctattttttcaattca 160  Q
    ||||||||| ||||||| | ||| ||||| | || |||||||||||| ||||| ||||| |||| | |||||||||||||||||||    
T  17953267 atttaaaataaaataccactatt-aaacactactgatgtgtgtgttctattttttgtggtaccccacactctattttttcaattca 17953183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 24672453 - 24672364
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctatttttt 153  Q
    ||||||| ||||||||| ||||||||| | ||||||||||| |  | || || ||| || ||||||| ||||||||  ||||||||||||    
T  24672453 tcattattaagtatttacaattaaatatcacaatttaaacactattgatctgcgtgctctattttatttgggacccccactctatttttt 24672364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 33100550 - 33100623
Alignment:
Q  64 tcattatcaagtattt-aaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacc 138  Q
    |||||||||||||||| ||||||||||||  ||||||||| |||  |||  ||||| ||| |||||||||||||||    
T  33100550 tcattatcaagtatttaaaaattaaatactgcaatttaaagattattaa--tgtgtattctattttatgtgggacc 33100623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 20520868 - 20521057
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||| |||||||||||||||      ||||||||||        ||||||||||||||||||| ||||||||| |||||||    
T  20520868 taaatttatgggaagtgatattctcgaataaaaataata------attactattattttta--tcattatcaagtatttaaagttaaataccgcaattta 20520959  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||| ||| |||||||||||||  |||| ||||||||||||||||||| | || |||| ||||||||||||||| ||| |||||    
T  20520960 aacactactaatgtgtgtattctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgttt 20521057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 18472968 - 18473092
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  18472968 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 18473067  T
Q  162 ataatattatatcaaagtataatta 186  Q
    | || |||| |||||||||||||||    
T  18473068 acaacattagatcaaagtataatta 18473092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 7570349 - 7570215
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||| |||||||| ||||  |||| |||||||||||||||||||     
T  7570349 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgcgggacccccacactctattttttcaattcac 7570250  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  7570249 acaacattagatcaaagtataattacttggtgttt 7570215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 14437879 - 14437726
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||| ||||||||||| ||||||||||||||| | || |||| | |||        ||||||||||||||||||||||||||||| |||||||    
T  14437879 taaatttatggaaagtgatattctcgaataaaaataataattattattattttta--------tcattatcaagtatttaaaattaaataccacaattta 14437788  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattca 160  Q
    |||| | ||||||||||||||| |||||||||| |||  ||| |||||||||||||||||||    
T  14437787 aacactactaatgtgtgtgttctattttatgtgagacctccacactctattttttcaattca 14437726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 757497 - 757364
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||| |||||||||| ||  |||| |||||||||||||||||||     
T  757497 tcattatcaagtatttaaa-ttaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgagacccccacactctattttttcaattcac 757399  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  757398 acaacattagatcaaagtataattacttggtgttt 757364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 23660619 - 23660489
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||  |||||||||||||   ||| ||||||||||||||||||| | ||    
T  23660619 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttttattttatgtgggagctccacactctattttttcaattcacacaa 23660520  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||| ||||||||||||||| ||| |||||    
T  23660519 cattagatcaaagtataattacttggtgttt 23660489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 23665251 - 23665121
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||| |||||   ||| ||||||||||||||||||| | ||    
T  23665251 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatatgggagctccacactctattttttcaattcacacaa 23665152  T
Q  166 tattatatcaaagtataattagttgatgttt 196  Q
     |||| ||||||||||||||| ||| |||||    
T  23665151 cattagatcaaagtataattacttggtgttt 23665121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 55326739 - 55326872
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| ||| |||||||||||||||     
T  55326739 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactatattttttcaattcac 55326838  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| |||||| |||||||| ||| |||||    
T  55326839 acaacattagatcaaa-tataattacttggtgttt 55326872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 12970999 - 12970808
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtattt-aaaattaaatacctcaattt 99  Q
    |||||||||||||||||||||||||||||||||||||||      ||||||||||        |||||||| ||||||| ||||||||||||| ||||||    
T  12970999 taaatttatgggaagtgatattcacgaataaaaataata------attactattatttttta-tcattatccagtattttaaaattaaataccgcaattt 12970907  T
Q  100 aaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    ||||| | |||| |||||||||| |||||||||||||   ||| ||| ||||||||||||||| | || |||| ||||| ||||||||| ||| |||||    
T  12970906 aaacactactaaagtgtgtgttctattttatgtgggatcaccacactttattttttcaattcacacaacattaaatcaacgtataattacttggtgttt 12970808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 46964920 - 46965108
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    |||||||||| |||||||||||| ||||||||||||||  | || |||| | |||        ||||||||||||||||||||||||||||| || ||||    
T  46964920 taaatttatgtgaagtgatattctcgaataaaaataattattattattattttta--------tcattatcaagtatttaaaattaaataccgcagttta 46965011  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggacc--catactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| |  ||||||||| |||| |||||||||||| ||  || ||||||||||||||||||| | || |||| ||||||||||||||| ||| |||||    
T  46965012 aacact-ataatgtgtgagttctattttatgtggggccctcacactctattttttcaattcacacaacattagatcaaagtataattatttggtgttt 46965108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 3656391 - 3656257
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatac--tctattttttcaattcag 161  Q
    ||||||||| ||||||||||||||||||| | ||||||||| | |||||||  |||||| |||||||||||||||| |||  |||||||||||||||||     
T  3656391 tcattatcaggtatttaaaattaaataccactatttaaacactactaatgtccgtgttctattttatgtgggacccctacattctattttttcaattcac 3656292  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || | || |||||||| |||||| ||| |||||    
T  3656291 acaacactaaatcaaagtttaattacttggtgttt 3656257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 18468174 - 18468308
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgt-gggacccatactcta-ttttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| || |||||| |   |||| |||||| |||||||||||||     
T  18468174 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctatattatgtagacccccacactctatttttttcaattcac 18468273  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| |||||| |||||||| ||| |||||    
T  18468274 acaacattagatcaaactataattacttggtgttt 18468308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 27709893 - 27710013
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcaga 162  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||   || ||||| ||||||||||||| |||| ||||||||||||||||||| |    
T  27709893 tcattatcaagtatttaaaattaaataccacaatttaaacactactaa--cgtatgttctattttatgtgggaccccacactctattttttcaattcaca 27709990  T
Q  163 taatatt-atatcaaagtataat 184  Q
     || ||| | |||||||||||||    
T  27709991 caacattaaaatcaaagtataat 27710013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 39774959 - 39774890
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtg 133  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||||||    
T  39774959 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgtg 39774890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 12111769 - 12111605
Alignment:
Q  6 ttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaatttaaacat 105  Q
    ||||||||||||||||||||||||||||||      ||||||||||||||        ||||||||||| |||||||||||||||||  |||||||||||    
T  12111769 ttatgggaagtgatattcacgaataaaaat------aataattactattattttta--tcattatcaagcatttaaaattaaataccgaaatttaaacat 12111678  T
Q  106 tgctaatgtgtgtgttccattttatgtgggacccatactctattttttcaattcagataatattatatcaaagtataatt 185  Q
    | |      |||||||| |||||||||| |||||| ||| || |||||||||||| | |  | |||||||||||||||||    
T  12111677 tac-----ggtgtgttctattttatgtgagacccacactttactttttcaattcacaca--actatatcaaagtataatt 12111605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 7860686 - 7860767
Alignment:
Q  80 aaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattc 159  Q
    |||||||||||||  |||||||||| |  |||||||||||||| ||||||||||||||  ||| ||||||||||||||||||    
T  7860686 aaaattaaataccataatttaaacactattaatgtgtgtgttctattttatgtgggacctccacactctattttttcaattc 7860767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 12965018 - 12964883
Alignment:
Q  64 tcattatcaagtattt-aaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactcta-ttttttcaattc 159  Q
    |||||||||| ||||| ||||||||||||| ||||||||||| | |||| || ||||||  ||||||||||||||  ||| |||||| ||||||||||||    
T  12965018 tcattatcaaatattttaaaattaaataccgcaatttaaacactactaaagtttgtgtt-tattttatgtgggaccaccacactctatttttttcaattc 12964920  T
Q  160 agataatattatatcaaagtataattagttgatgttt 196  Q
    |   || |||| ||||||||||||||| ||| |||||    
T  12964919 atgcaacattaaatcaaagtataattacttggtgttt 12964883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 20175368 - 20175486
Alignment:
Q  77 tttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc-atactctattttttcaattcagataatattatatca 175  Q
    |||||||||||||||  ||||||||| | | |||||||||||  || ||||||||||| |||| | ||||||||||||||||| | | || |||| ||||    
T  20175368 tttaaaattaaatactgcaatttaaatactactaatgtgtgt--tctattttatgtggaaccccacactctattttttcaattaacacaacattagatca 20175465  T
Q  176 aagtataattagttgatgttt 196  Q
    ||||||||||| ||| |||||    
T  20175466 aagtataattacttggtgttt 20175486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 55432189 - 55432285
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattca 160  Q
    |||||||||| |||||||||||||||||  ||||||||||| | ||||  ||||||||| ||||| |||||||  |||| ||| |||||||||||||||    
T  55432189 tcattatcaaatatttaaaattaaatactgcaatttaaacactactaa--tgtgtgttctattttgtgtgggacccccacactttattttttcaattca 55432285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 29351189 - 29351263
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacc 138  Q
    |||||||||  |||||||||||||||||| | ||||||||| |  |||||||||||||  |||||||||||||||    
T  29351189 tcattatcagatatttaaaattaaataccactatttaaacactaataatgtgtgtgttttattttatgtgggacc 29351263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 3426047 - 3426110
Alignment:
Q  76 atttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc 139  Q
    |||||||||| |||||| || |||||||| | |||||||||| |||| ||||||||||| ||||    
T  3426047 atttaaaattgaataccgcagtttaaacactactaatgtgtgagttctattttatgtggtaccc 3426110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3419900 - 3419938
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  3419900 taaatttatgcgaagtgatattctcgaataaaaataata 3419938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 55432134 - 55432172
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  55432134 taaatttatgggaaatgatattctcgaataaaaataata 55432172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 11569825 - 11569692
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcaga 162  Q
    ||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |    
T  11569825 tcattatcaagtatttaaaattaaataccgcaatttaaacacttccaatgtgtgtgttctattttatgtgggaccccacactctattttttcaattcaca 11569726  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
     || |||| ||||||||||||||| ||| |||||    
T  11569725 caacattagatcaaagtataattacttggtgttt 11569692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 11533890 - 11533702
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||| ||||||||||| ||||||||||||||| | | ||||| | |||        ||||||||||||||||||||||||||||| |||||||    
T  11533890 taaatttatggaaagtgatattctcgaataaaaataataattacaattattttta--------tcattatcaagtatttaaaattaaataccgcaattta 11533799  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | | ||||||||||||| ||||||||||||| |||| ||| ||||||||||||||| | || |||| |||||| |||||||| ||| |||||    
T  11533798 aacactaccaatgtgtgtgttctattttatgtgggaccccacactttattttttcaattcacacaacattagatcaaactataattacttggtgttt 11533702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 11559400 - 11559212
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||| ||||||||||| ||||||||||||||| | | ||||| | |||        ||||||||||||||||||||||||||||| |||||||    
T  11559400 taaatttatggaaagtgatattctcgaataaaaataataattacaattattttta--------tcattatcaagtatttaaaattaaataccgcaattta 11559309  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | | ||||||||||||| ||||||||||||| |||| ||| ||||||||||||||| | || |||| |||||| |||||||| ||| |||||    
T  11559308 aacactaccaatgtgtgtgttctattttatgtgggaccccacactgtattttttcaattcacacaacattagatcaaactataattacttggtgttt 11559212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 20747486 - 20747297
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    |||||||||||||||||||||||||||||||||||||||      |||||||||         || |||||||||||||||||||||||||| |||||||    
T  20747486 taaatttatgggaagtgatattcacgaataaaaataata------attactattgttttta--tcgttatcaagtatttaaaattaaataccgcaattta 20747395  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | |||||||||  |||| ||||||||| |||  |||| ||||||||||||||||||| | || |||| ||||||||||||||| |||||||||    
T  20747394 aacactactaatgtgtaagttctattttatgtaggacccccacactctattttttcaattcacacaacattaaatcaaagtataattacttgatgttt 20747297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 25313664 - 25313487
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||| ||||||||||||| |||||||||||||||      ||||||||||        ||||||||||||||||||||||||||||| |||||||    
T  25313664 taaatttataggaagtgatattctcgaataaaaataata------attactattatttttttatcattatcaagtatttaaaattaaataccgcaattta 25313571  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggacc--catactctattttttcaattcagataatattatatcaaagtata 182  Q
    |||| | ||||| | ||||||| |||||||||| ||||  || ||||||||||||||||||| | || ||||||||||||||||    
T  25313570 aacactactaatatatgtgttctattttatgtgtgacccgcacactctattttttcaattcataaaacattatatcaaagtata 25313487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 26201158 - 26200981
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||| ||||||||||||| |||||||||||||||      ||||||||||        ||||||||||||||||||||||||||||| |||||||    
T  26201158 taaatttataggaagtgatattctcgaataaaaataata------attactattatttttttatcattatcaagtatttaaaattaaataccgcaattta 26201065  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggacc--catactctattttttcaattcagataatattatatcaaagtata 182  Q
    |||| | ||||| | ||||||| |||||||||| ||||  || ||||||||||||||||||| | || ||||||||||||||||    
T  26201064 aacactactaatatatgtgttctattttatgtgtgacccgcacactctattttttcaattcataaaacattatatcaaagtata 26200981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 17963692 - 17963558
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||||||||||||||||     
T  17963692 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcac 17963593  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | |  |||| ||||||||||| ||| ||| |||||    
T  17963592 acatcattagatcaaagtatagttacttggtgttt 17963558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 12405549 - 12405360
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    |||||||||||||||||||||||||||||||||||||||      ||||||||||        |||||||||||||||||||||||| ||||||||||||    
T  12405549 taaatttatgggaagtgatattcacgaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaagtacctcaattta 12405458  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    | || | ||||||||||||||| ||||||| || ||   ||| |||||||||||| |||| | | || |||| |||||| ||||||||||||||||||    
T  12405457 atcactactaatgtgtgtgttctattttatttgtgatctccacactctatttttttaattaacacaacattagatcaaaatataattagttgatgttt 12405360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 6406994 - 6406860
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||  |||  |||| |||||||||||||||||||     
T  6406994 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcaggacccccacactctattttttcaattcac 6406895  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || | || ||||||||||||||| ||| |||||    
T  6406894 acaacaatagatcaaagtataattacttggtgttt 6406860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 16835296 - 16835161
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactcta-ttttttcaattca 160  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||  |||| |||||| |||||| ||||||    
T  16835296 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactctattttttttaattca 16835197  T
Q  161 gataatattatatcaaagtataattagttgatgttt 196  Q
     | || |||| ||||||||||| ||| ||| |||||    
T  16835196 cacaacattagatcaaagtatatttacttggtgttt 16835161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 17600342 - 17600473
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacc--catactctattttttcaattcag 161  Q
    |||||||||| |||||||||||||||||| |||||||||||   ||||||| ||||||| |||||||||||||||  || |||||||||||||||||||     
T  17600342 tcattatcaattatttaaaattaaataccacaatttaaaca---ctaatgtttgtgttctattttatgtgggaccctcacactctattttttcaattcac 17600438  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| |||||||||| |||| ||| |||||    
T  17600439 acaacattagatcaaagtatgattacttggtgttt 17600473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 19994518 - 19994395
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    |||| |||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||| ||||||  |||| |||||||||||| ||||||     
T  19994518 tcataatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttacgtgggacccccacactctatttttt-aattcac 19994420  T
Q  162 ataatattatatcaaagtataatta 186  Q
    |||| |||  || ||||||||||||    
T  19994419 ataacattcgattaaagtataatta 19994395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 11613037 - 11612922
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcag 161  Q
    |||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||  ||||||||||||||  | | ||||||||||||||||| |     
T  11613037 tcattatcaagtatttaaaattaaataccgaaatttaaacactactaatgtgtgtgttttattttatgtgggacctcaacactctattttttcaatttat 11612938  T
Q  162 ataatattatatcaaa 177  Q
    |||| |||| ||||||    
T  11612937 ataacattagatcaaa 11612922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2699304 - 2699114
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||| |||||||||||||||      ||||||||||        | |||||| |||||||||||||||||||| |||||||    
T  2699304 taaatttatgggaagtgatattctcgaataaaaataata------attactattattttta--ttattatctagtatttaaaattaaataccgcaattta 2699213  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctat-tttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||  ||| |||||||||||||  |||| ||||||| |||| | ||||| | || |||| || |||||||||||| |||||||||    
T  2699212 aacactactaatgtgtgaattctattttatgtgggacccccacactctatattttaccattcacacaacattagattaaagtataattacttgatgttt 2699114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 12689942 - 12690028
Alignment:
Q  75 tatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac-ccatactctattttttcaattca 160  Q
    |||||||||||||||||| | ||||||||| | ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  12689942 tatttaaaattaaataccgctatttaaacactactaatgtgtgtgttctattttatgtgggactccacactctattttttcaattca 12690028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 33686777 - 33686644
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc-atactctattttttcaattcaga 162  Q
    |||||| ||||||||||||| |||||||| || |||||||| | ||||| |||  |||  ||||||||||| |||| | ||||||||||||||||||| |    
T  33686777 tcattaccaagtatttaaaactaaataccacagtttaaacactactaatttgtaagttttattttatgtggaaccccacactctattttttcaattcaca 33686678  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
     || |||| ||||||||||||||| |||||||||    
T  33686677 caaaattagatcaaagtataattatttgatgttt 33686644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 22694517 - 22694385
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgcta-atgtgtgtgttccattttatgtgggacccatactctattttttcaattcaga 162  Q
    |||||||||||| |||| ||||||||||  ||||||||||| | ||| |||||||||||| |||||||||||||||   |  |||||||||||||||| |    
T  22694517 tcattatcaagtttttataattaaatacggcaatttaaacact-ctagatgtgtgtgttctattttatgtgggacctccaaactattttttcaattcaca 22694419  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
     || |||| ||||||||||||||| ||| |||||    
T  22694418 caacattagatcaaagtataattacttggtgttt 22694385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 22610473 - 22610568
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaat 157  Q
    |||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||  ||||||||||| ||  ||| | ||||||||||||||    
T  22610473 tcattatcaagtatttaaaattaaataccaaaatttaaacactactaatgtgtgtgttttattttatgtggaactgccacaatctattttttcaat 22610568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 5856947 - 5857022
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc 139  Q
    |||||||||| |||||||||||||||||| ||||||||||| | ||||||||| ||||| | ||||||||||||||    
T  5856947 tcattatcaattatttaaaattaaataccgcaatttaaacactactaatgtgtatgttctagtttatgtgggaccc 5857022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 12797914 - 12797782
Alignment:
Q  70 tcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtg----ttccattttatgtgggacc--catactctattttttcaattcagat 163  Q
    ||||||||||||||||||||||| | ||||||||| | ||| ||||||||    ||| |||||||||||||||  || ||||||||||||||||||| |     
T  12797914 tcaagtatttaaaattaaataccactatttaaacactactagtgtgtgtgtgttttctattttatgtgggacccacacactctattttttcaattcacac 12797815  T
Q  164 aatattatatcaaagtataattagttgatgttt 196  Q
    || | || |||||||| |||||| ||| |||||    
T  12797814 aacactagatcaaagtctaattacttggtgttt 12797782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17914499 - 17914628
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||||| |||||||||||||      ||| ||||||        |||| |||| |||||||||||||||||||  |||| |    
T  17914499 taaatttatgggaagtgatattcacaaataaaaataata------attgctattattttta--tcatcatcaggtatttaaaattaaataccgtaattaa 17914590  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggacc 138  Q
    |||| |  |||||||||||||||||||||||| |||||    
T  17914591 aacactattaatgtgtgtgttccattttatgtaggacc 17914628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11428873 - 11428911
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11428873 taaatttatgggaagtgatattcacgaataaaaataata 11428911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 19674735 - 19674868
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggacccatactctatttttt-caattcaga 162  Q
    ||||||| | ||||||||||||||||| |   ||||||||| | || |||||||||||| ||||||||| ||||||  || ||||||||| ||||||| |    
T  19674735 tcattattaggtatttaaaattaaatatcattatttaaacactactgatgtgtgtgttctattttatgtcggacccccacactattttttccaattcaca 19674834  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
     || | || |||||||| |||||| ||| |||||    
T  19674835 caacactagatcaaagtttaattatttggtgttt 19674868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 11428933 - 11429043
Alignment:
Q  77 tttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataatattatatc 174  Q
    |||||||||||| ||| || |||||| | | | |||||||||| || |||| |||||||||||  | |||||||||||||||||||   || |||| |||    
T  11428933 tttaaaattaaa-accgcagtttaaatactacaaatgtgtgtgctctatttaatgtgggacccccacactctattttttcaattcacgcaacattagatc 11429031  T
Q  175 aaagtataatta 186  Q
    ||||||||||||    
T  11429032 aaagtataatta 11429043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4156524 - 4156486
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataata 39  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  4156524 taaatttatcggaagtgatattctcgaataaaaataata 4156486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 14509941 - 14509979
Alignment:
Q  66 attatcaagtatttaaaattaaatacctcaatttaaaca 104  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  14509941 attattaagtatttaaaattaaataccacaatttaaaca 14509979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 8071 - 8205
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcag 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| || ||||||||||  |||| |||||||||||||||||||     
T  8071 tcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctatcttatgtgggacccccacactctattttttcaattcac 8170  T
Q  162 ataatattatatcaaagtataattagttgatgttt 196  Q
    | || |||| ||||||||||||||| ||| |||||    
T  8171 acaacattaaatcaaagtataattacttggtgttt 8205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 6139 - 6328
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    |||||||||||||||||||||||||||||||||||||||      ||||||||||        ||||||||||||||||||||||||||||| |||||||    
T  6139 taaatttatgggaagtgatattcacgaataaaaataata------attactattattttta--tcattatcaagtatttaaaattaaataccacaattta 6230  T
Q  101 aacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    ||||   ||||||||||| ||| || |||||||||||  | | ||||||||||||||||||| |||| |||| ||| ||||||||||| ||| |||||    
T  6231 aacaccactaatgtgtgtattctatcttatgtgggacctcaacactctattttttcaattcacataacattagatcgaagtataattacttggtgttt 6328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30084 - 30273
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||| |||||||||||||||      ||||||||||        ||||||||| ||| ||||||||||||||| |||||||    
T  30084 taaatttatgggaagtgatattctcgaataaaaataata------attactattattttta--tcattatcatgtagttaaaattaaataccgcaattta 30175  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | ||||||||||||||| |||||||||||||  || | ||||||||||||||||||| | || |||| |||||| |||||||| ||| |||||    
T  30176 aacactactaatgtgtgtgttctattttatgtgggatccctacactctattttttcaattcacacaacattagatcaaaatataattacttggtgttt 30273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 26405 - 26501
Alignment:
Q  66 attatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggac--ccatactctattttttcaattca 160  Q
    ||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||  ||  |||||||||||||||||||    
T  26405 attatcaggtatttaaaattaaatacctctatttaaacactactaatgtgtgtgttctattttatgtgggacctccgcactctattttttcaattca 26501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 443073 - 442940
Alignment:
Q  64 tcattatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc-atactctattttttcaattcaga 162  Q
    |||||||||| |||||||||||||||||| ||||||||||    ||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |    
T  443073 tcattatcaaatatttaaaattaaataccacaatttaaacccaactaatgtgtgtgttctattttatgtgggaccccacactctattttttcaattcaca 442974  T
Q  163 taatattatatcaaagtataattagttgatgttt 196  Q
     || |||| ||||||||||||||| || ||||||    
T  442973 caacattagatcaaagtataattatttaatgttt 442940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 5030 - 5146
Alignment:
Q  68 tatcaagtatttaaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtggga--cccatactctattttttcaattcagataa 165  Q
    ||||||||||||||||||||||||| ||||||||||| | |||||||| |||||| |||||||| ||||  |||| ||||||||||||||||||| | ||    
T  5030 tatcaagtatttaaaattaaataccacaatttaaacactactaatgtgagtgttctattttatgcgggacccccacactctattttttcaattcacacaa 5129  T
Q  166 tattatatcaaagtata 182  Q
     |||| |||||||||||    
T  5130 cattagatcaaagtata 5146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 36029 - 36217
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||||| |||||||||||||      ||||||||||        |||||||||| |||||||||||||||||| || ||||    
T  36029 taaatttatgggaagtgatattcacaaataaaaataata------attactattattttta--tcattatcaaatatttaaaattaaataccgcagttta 36120  T
Q  101 aacattgctaatgtgtgtgttccattttatgt-gggacccatactctattttttcaattcagataatattatatcaaagtataattagttgatgttt 196  Q
    |||| | |||||| ||| |||| ||||||||| ||| |||| ||||||||||||||||||| | || |||| |||||| |||||||| ||| |||||    
T  36121 aacactactaatgcgtgagttctattttatgtggggccccacactctattttttcaattcatacaacattagatcaaaatataattatttggtgttt 36217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 4878 - 5055
Alignment:
Q  1 taaatttatgggaagtgatattcacgaataaaaataatagtaataattactattannnnnnnctcattatcaagtatttaaaattaaatacctcaattta 100  Q
    ||||||||||||||||||||||||||||||||||      |||||||||||||||        ||||||||||||||||||||||||||||| ||| |||    
T  4878 taaatttatgggaagtgatattcacgaataaaaa------taataattactattatttttta-tcattatcaagtatttaaaattaaataccgcaactta 4970  T
Q  101 aacattgctaatgtgtgtgttccattttatgtggga-cccatactctattttttcaattcagataatattatatcaaagtataatta 186  Q
    ||||   ||||  | ||||||  ||||||||||| | |||| ||| ||||||||||||||| | || |||| |||||||||||||||    
T  4971 aacacaactaa--tatgtgttatattttatgtggtaccccacactatattttttcaattcacacaacattagatcaaagtataatta 5055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 65013 - 64904
Alignment:
Q  79 taaaattaaatacctcaatttaaacattgctaatgtgtgtgttccattttatgtgggaccc--atactctattttttcaattcagataatattatatcaa 176  Q
    |||| ||||||||| | ||||||| | | ||||||||||||||| ||||||||||||||||  | |||||||||||| |||||| | || | || |||||    
T  65013 taaatttaaataccactatttaaagactactaatgtgtgtgttctattttatgtgggacccctacactctatttttttaattcacacaacactagatcaa 64914  T
Q  177 agtataatta 186  Q
    ||| ||||||    
T  64913 agtttaatta 64904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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