View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_low_3 (Length: 563)
Name: NF12684_low_3
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 29613343 - 29612783
Alignment:
| Q |
1 |
tcatagtgattctctatgataatggagagagaaaatggagaagatcctaattcttcgagcaaagctatatggtttccaattttatattaattatttcttt |
100 |
Q |
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| T |
29613343 |
tcatagtgattctctatgataatggagagagaaaatggagaagatcctaattcttcgagcaaagctatatggtttccaattttatattaattatttcttt |
29613244 |
T |
|
| Q |
101 |
ctcctcggaattcgaacacaaaaatgtgtattttaccctgttaaattatgtccaaataccagtcttgctatttccattgtccatatatatatggattaaa |
200 |
Q |
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| T |
29613243 |
ctcctcg-aattcgaacacaaaaatgtgtattttaccctgttaaattatgcccaaataccagtcttgttatttccattgtccatatatatatggattaaa |
29613145 |
T |
|
| Q |
201 |
caatcccctacaatgctacaacacttatagaatttgtttcatgta---------------gatcacctccaccactagcaacctctgttatggaatctga |
285 |
Q |
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| T |
29613144 |
caatcccttacaatgctacaacacttatagaatttgtttcatgtataatgtctacatgtagatcacctccatcactagcaacctctgttatggaatctga |
29613045 |
T |
|
| Q |
286 |
agaacagtgaatatcttgaccttcactagatacatctttttggcaatctggatatgactcaataataacctgactaatttcgttgccaacatcaacatct |
385 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29613044 |
agaacagtgaatatcttgaccttcactagatacctctttttggcaatctggatatgactcaataataacttgactaatttcgttgccaacatcaacatct |
29612945 |
T |
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| Q |
386 |
ggttgacctacattaccaacctctggatcagaacctgaagattcatcaattatttgatccgtgtcgacctcatcttgggaatgtgaagacgaatgcataa |
485 |
Q |
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| T |
29612944 |
ggttgacctacattaccaacctctggatcagaacctgaagattcatcaataatttgatccgtgtcgacctcatcttgggaatgtgaagacgaatgcataa |
29612845 |
T |
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| Q |
486 |
caaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagt |
547 |
Q |
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| T |
29612844 |
caaagagtggacaaccaaagattatagcaaccaaaatcagcatccaattgatggtccacagt |
29612783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 246 - 547
Target Start/End: Complemental strand, 29525283 - 29524994
Alignment:
| Q |
246 |
gatcacctccaccactagcaacctctgttatggaatctgaagaacagtgaatatcttgaccttcactagatacatctttttggcaatctggatatgactc |
345 |
Q |
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|||||| ||||| ||||||||| |||| ||||| | ||||| | || |||| ||||||||||||||||||| |||| |||| |||| ||||||| || |
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| T |
29525283 |
gatcacttccacaactagcaacttctggtatggtaactgaa---ctgtcaataacttgaccttcactagatacctcttgttggttatctagatatgaatc |
29525187 |
T |
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| Q |
346 |
aataataacctgactaatttcgttgccaacatcaacatctggttgacctacattaccaacctctggatcagaacctgaagattcatcaattatttgatcc |
445 |
Q |
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||||||||| |||| ||| | | ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29525186 |
aataataacacgact---ttcatgggcaacatc------tggttgaactgtattaccaacctctggatcagaacctgaagattcatcaataatttgatcc |
29525096 |
T |
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| Q |
446 |
gtgtcgacctcatcttgggaatgtgaagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccaca |
545 |
Q |
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|||||||||| |||||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
29525095 |
ctgtcgacctcttcttggtaatgcgaagacgaatgcataacaaagagcgggcaaccaaagattatagcaaccgaaatcagcatccaattgatggtccaca |
29524996 |
T |
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