View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12684_low_4 (Length: 552)
Name: NF12684_low_4
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 535
Target Start/End: Original strand, 2741324 - 2741854
Alignment:
| Q |
10 |
gagatgaattagtatatgattttctttaagcttgcgtgtaaaacaaatgtttgaatctcatatctaagattccattgaagaaaataagcatttgaaaaat |
109 |
Q |
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| T |
2741324 |
gagatgaattagtatatgattttctttaagcttgtgggtaaaacaaatgtttgaatctcatatctaagatttcatcgaataaaataagcagttgaaaaat |
2741423 |
T |
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| Q |
110 |
aacggaga-catgagctgaaacagagtctgtctgtccctgaagtcggatgttcattccagaggtttgggtgaaatttgggttaatggagtttggatagct |
208 |
Q |
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| T |
2741424 |
agcggagatcatgagctgaaacagagtctgtttgtacctgaagttacatgttcattccagaggtttgagtgaaatttgggttaatggagtttggatagct |
2741523 |
T |
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| Q |
209 |
gatcaatagtgatcattttgatatataaaagtgagagatgatttggtccaaaaatttcaaactttaccaatgaactatgatgtttgttataaaataccag |
308 |
Q |
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| T |
2741524 |
gatcaatagtgatcattttgttatataaaagtgagagacgatttagtaacagaatttcaaactttaccaatgaactatgatttttgttataaaataccag |
2741623 |
T |
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| Q |
309 |
tatgctttacaaaaattccgccatactaaaaaacttcaacacaattaaaatacataactaaactattg------------caaccccactcacaatggga |
396 |
Q |
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||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
2741624 |
tatactttacaaaaatttcgccgtact-aaaaacttcaacacaattaaaatacataactaaagtattgtgttaacatatacaaccccactcacaatggga |
2741722 |
T |
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| Q |
397 |
tcttcacttcccatatagaaaactaataaataaacttttttgtttatataacttcgttaactagttcctagtatggatccataattcatttgtttttgtg |
496 |
Q |
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||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
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| T |
2741723 |
tcttcacctcctatatagaaaactaataaa-----ctttttgtttctataacttcgttaaccagtttctagtatggat-cataattcatttgtttttgtg |
2741816 |
T |
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| Q |
497 |
gttaaaatagttgtgtccaatgaatgattagatcttatt |
535 |
Q |
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||||||||||| |||| |||||||||||||||||||||| |
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| T |
2741817 |
gttaaaatagtagtgt-caatgaatgattagatcttatt |
2741854 |
T |
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