View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12684_low_5 (Length: 533)
Name: NF12684_low_5
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12684_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 27361491 - 27360973
Alignment:
| Q |
1 |
cgatggagttgtttgatgaagctgttggagttggattgagtcctgacgtggttacttttaatgcattgattgaagggtatagtagggaagggagagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27361491 |
cgatggagttgtttgatgaagctgttggagttggattgaggcctgatgtggttacatttaatgcattgattgaagggtatagtagggaagggagagaaat |
27361392 |
T |
|
| Q |
101 |
ggagggtgttggtgttttgaagatgatgaaagagcatggttgtgttgctgatttgattaattataagactgttttacatgggttgttaaagtggaatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27361391 |
ggagggtgttggtgttttgaagatgatgaaagagcatggttgtgttgctgatttgattaattataagactgttttacatgggttgttaaagtggaatgaa |
27361292 |
T |
|
| Q |
201 |
actgtggaagcatttggggtttataaagaaatggtaaggattggatttgaagtcgattcgaggatgatggggactttggtgaggcgtttgtgtaagtggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27361291 |
actgtggaagcatttggggtttataaagaaatggtaaggattggatttgaagtcgattcgaggatgatggggactttggtgaggcgtttgtgtaagttgt |
27361192 |
T |
|
| Q |
301 |
catggagggaaaaagggttgcttgaggatgcttgtgaagtgtttgagaaaatgaaagaaagggatttggtggttgataagaggactgttgaggtgatggt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27361191 |
catggagggaaaaagggttgcttgaggatgcttgtgaagtgtttgagaaaatgaaagaaaggggtttggtggttgataagaggactgttgaggtgatggt |
27361092 |
T |
|
| Q |
401 |
tgaggcattgtttaggggggagaagtttgatgaggctttggtgaatttaaatgatatggttaggtggggttattctcttgagggaattgcatttgaggaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27361091 |
tgaggcattgtttaggggggagaagtttgatgaggctttggtgaatttaaatgatatggttaggtggggttattctcttgagggaattgcatttgaggaa |
27360992 |
T |
|
| Q |
501 |
gtgattgaaggactttgtg |
519 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27360991 |
gtgattgaaggactttgtg |
27360973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University