View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12684_low_7 (Length: 518)

Name: NF12684_low_7
Description: NF12684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12684_low_7
NF12684_low_7
[»] chr4 (6 HSPs)
chr4 (41-256)||(26718162-26718379)
chr4 (41-256)||(26730790-26731007)
chr4 (369-499)||(26731270-26731401)
chr4 (369-481)||(26718642-26718755)
chr4 (248-340)||(26718552-26718644)
chr4 (248-340)||(26731180-26731272)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 26718162 - 26718379
Alignment:
Q  41 tgagagaatatgtgaaagagaaatgtaaaatgggtggggacaacatccatttttgtatatgggaaccaaaatgttgaaaagtatataaaaggaaaaataa 140  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  26718162 tgagagaatatgttaaagagaattg-aaaatgggtggggacaacatccatttttgaatatgtgaaccaaaatgttgaaaagtatataaaaggaaaaataa 26718260  T
Q  141 tgtgtgggggaaatcgcacaatagc---ttatgagtagatccgccattgtagctaagtacaggagcttgccatagagaatataaactgtctgccattgta 237  Q
    ||||||||||||||| | |||||||   ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26718261 tgtgtgggggaaatcactcaatagcttattatgagcagatccgccattgtatctaagtacaggagcttgccatagagaatataaactgtctgccattgta 26718360  T
Q  238 aaagagcaagaaaaattta 256  Q
    |||||||||||||||||||    
T  26718361 aaagagcaagaaaaattta 26718379  T

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Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 26730790 - 26731007
Alignment:
Q  41 tgagagaatatgtgaaagagaaatgtaaaatgggtggggacaacatccatttttgtatatgggaaccaaaatgttgaaaagtatataaaaggaaaaataa 140  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  26730790 tgagagaatatgttaaagagaattg-aaaatgggtggggacaacatccatttttgaatatgtgaaccaaaatgttgaaaagtatataaaaggaaaaataa 26730888  T
Q  141 tgtgtgggggaaatcgcacaatagc---ttatgagtagatccgccattgtagctaagtacaggagcttgccatagagaatataaactgtctgccattgta 237  Q
    ||||||||||||||| | |||||||   ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26730889 tgtgtgggggaaatcactcaatagcttattatgagcagatccgccattgtatctaagtacaggagcttgccatagagaatataaactgtctgccattgta 26730988  T
Q  238 aaagagcaagaaaaattta 256  Q
    |||||||||||||||||||    
T  26730989 aaagagcaagaaaaattta 26731007  T

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Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 369 - 499
Target Start/End: Original strand, 26731270 - 26731401
Alignment:
Q  369 acataccacccatccattattagtggatgtggatcccaattccaaaaaactatgaaagaaatgttgaagaataacacgaatccattttggaagcattgct 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26731270 acataccacccatccattattagtggatgtggatcccaattccaaaaaactatgaaagaaatgttgaagaataacacgaatccattttggaagcattgct 26731369  T
Q  469 atgtgg-gaatcttgacctactgtttcatgac 499  Q
    ||||||  ||||||||||||||||||||||||    
T  26731370 atgtggcaaatcttgacctactgtttcatgac 26731401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 369 - 481
Target Start/End: Original strand, 26718642 - 26718755
Alignment:
Q  369 acataccacccatccattattagtggatgtggatcccaattccaaaaaactatgaaagaaatgttg-aagaataacacgaatccattttggaagcattgc 467  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26718642 acataccacccatccattattagtggatgtggatccaaattccaaaaaactatgaaataaatgttgaaagaataacacgaatccattttggaagcattgc 26718741  T
Q  468 tatgtgggaatctt 481  Q
    |||||| |||||||    
T  26718742 tatgtgagaatctt 26718755  T

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Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 248 - 340
Target Start/End: Original strand, 26718552 - 26718644
Alignment:
Q  248 aaaaatttaagggccaataatggaagataattttggtcgcttcacgtacaccaaactagttgtcactactcactatcattagaggggttgaca 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26718552 aaaaatttaagggccaataatggaagataattttggtcgcttcacgtacactaaactagttgtcactactcactatcattagaggggttgaca 26718644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 248 - 340
Target Start/End: Original strand, 26731180 - 26731272
Alignment:
Q  248 aaaaatttaagggccaataatggaagataattttggtcgcttcacgtacaccaaactagttgtcactactcactatcattagaggggttgaca 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26731180 aaaaatttaagggccaataatggaagataattttggtcgcttcacgtacactaaactagttgtcactactcactatcattagaggggttgaca 26731272  T

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