View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12685_high_2 (Length: 438)

Name: NF12685_high_2
Description: NF12685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12685_high_2
NF12685_high_2
[»] chr2 (6 HSPs)
chr2 (17-423)||(9404354-9404760)
chr2 (175-212)||(34339034-34339071)
chr2 (178-212)||(2400070-2400104)
chr2 (175-212)||(11393777-11393814)
chr2 (175-212)||(11410438-11410475)
chr2 (175-212)||(42974263-42974300)
[»] chr3 (7 HSPs)
chr3 (218-318)||(43115073-43115173)
chr3 (175-212)||(29094292-29094329)
chr3 (177-212)||(46759176-46759211)
chr3 (183-212)||(39971238-39971267)
chr3 (175-212)||(49772790-49772827)
chr3 (176-212)||(28289243-28289279)
chr3 (215-319)||(37273148-37273252)
[»] chr8 (11 HSPs)
chr8 (175-212)||(26716558-26716595)
chr8 (175-209)||(8578533-8578567)
chr8 (297-359)||(44236735-44236797)
chr8 (175-212)||(5226513-5226550)
chr8 (175-212)||(8603612-8603649)
chr8 (176-209)||(11813230-11813263)
chr8 (175-212)||(12972767-12972804)
chr8 (175-212)||(27320227-27320264)
chr8 (175-212)||(34563161-34563198)
chr8 (175-212)||(35869748-35869785)
chr8 (176-212)||(26813927-26813963)
[»] chr7 (6 HSPs)
chr7 (176-213)||(40438982-40439019)
chr7 (245-317)||(39345515-39345587)
chr7 (173-212)||(19624135-19624174)
chr7 (179-212)||(3610862-3610895)
chr7 (295-352)||(33894721-33894778)
chr7 (176-212)||(45078205-45078241)
[»] chr5 (9 HSPs)
chr5 (175-212)||(6738529-6738566)
chr5 (175-212)||(27104536-27104573)
chr5 (222-318)||(10272384-10272480)
chr5 (176-212)||(10391265-10391301)
chr5 (175-212)||(3951528-3951565)
chr5 (175-212)||(26516209-26516246)
chr5 (175-212)||(29115335-29115372)
chr5 (175-212)||(29588791-29588828)
chr5 (179-212)||(32059710-32059743)
[»] chr4 (7 HSPs)
chr4 (178-215)||(39063765-39063802)
chr4 (289-352)||(7367973-7368036)
chr4 (175-212)||(24193496-24193533)
chr4 (175-212)||(24443949-24443986)
chr4 (175-208)||(25409797-25409830)
chr4 (175-212)||(44319861-44319898)
chr4 (175-212)||(46860280-46860317)
[»] scaffold0044 (1 HSPs)
scaffold0044 (160-212)||(52062-52114)
[»] chr1 (2 HSPs)
chr1 (175-211)||(4363754-4363790)
chr1 (180-212)||(16980742-16980774)
[»] chr6 (3 HSPs)
chr6 (218-281)||(3528820-3528883)
chr6 (175-208)||(1497891-1497924)
chr6 (175-212)||(31668807-31668844)
[»] scaffold0091 (1 HSPs)
scaffold0091 (175-212)||(5930-5967)
[»] scaffold0654 (1 HSPs)
scaffold0654 (180-212)||(6759-6791)
[»] scaffold0590 (1 HSPs)
scaffold0590 (160-212)||(1196-1248)
[»] scaffold0275 (1 HSPs)
scaffold0275 (160-212)||(2727-2779)
[»] scaffold0014 (1 HSPs)
scaffold0014 (180-212)||(116678-116710)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 9404354 - 9404760
Alignment:
Q  17 acttttctcaaaatcaaatcatactttatttcacattattgcaattgctcttgattgcacttattatgacgtgtccgtttccaactgctattttcatttc 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  9404354 acttttctcaaaatcaaatcatattttatttcacattattgcaattgctcttgatttcacttattatgacgtgtccgtttccaactgctattgtcatttc 9404453  T
Q  117 gtctatctnnnnnnnnnnnnnnnnntaataa-taaagcgccaatcttaattaagtcataatagcataaacacttatcatataagtgcttatgtataa-ct 214  Q
    ||||||||                 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9404454 gtctatctacaaaaaaaataaaa--taataaataaagcgcgaatcttaattaagtcataatagcataaacacttatcatataagtgcttatgtataaact 9404551  T
Q  215 ataaactatcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9404552 ataaactatcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgat 9404651  T
Q  315 tatgccttttgataaacttaaataagttactccaaacaagctcttaataagcttgtttgcatatcaatgcctttagaaataaataagtagtttgaggtag 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9404652 tatgccttttgataaacttaaataagttactccaaacaagctcttaataagcttgtttgcatatcaatgcctttagaaataagtaagtagtttgaggtag 9404751  T
Q  415 ttacttgtt 423  Q
    |||||||||    
T  9404752 ttacttgtt 9404760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 34339034 - 34339071
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34339034 atagcataaacacttatcatataagtgcttatgtataa 34339071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 2400070 - 2400104
Alignment:
Q  178 gcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||| |||||||||||||||||||||||||    
T  2400070 gcataaacaattatcatataagtgcttatgtataa 2400104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 11393814 - 11393777
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  11393814 atagcataaacatttatcatttaagtgcttatgtataa 11393777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 11410475 - 11410438
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  11410475 atagcataaacatttatcatttaagtgcttatgtataa 11410438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 42974263 - 42974300
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  42974263 atagcataaacacttatcatattagtgcttgtgtataa 42974300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 318
Target Start/End: Original strand, 43115073 - 43115173
Alignment:
Q  218 aactatcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgattat 317  Q
    ||||||| | |||||| |||| || | |||||||||| ||||| |||||||||| || ||||||| |  | |||| ||||||| ||||||||||||||||    
T  43115073 aactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattat 43115172  T
Q  318 g 318  Q
    |    
T  43115173 g 43115173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 29094292 - 29094329
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  29094292 atagcataaacacttatcatataagtgtttatgtataa 29094329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 46759211 - 46759176
Alignment:
Q  177 agcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||||||||| |||||||||||||||||    
T  46759211 agcataaacacttatcatttaagtgcttatgtataa 46759176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 39971238 - 39971267
Alignment:
Q  183 aacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||||||||||||||||    
T  39971238 aacacttatcatataagtgcttatgtataa 39971267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 49772827 - 49772790
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  49772827 atagcatagacacttatcatataagtgtttatgtataa 49772790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 28289279 - 28289243
Alignment:
Q  176 tagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  28289279 tagcataaacacttatcatctaagtgctcatgtataa 28289243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 37273148 - 37273252
Alignment:
Q  215 ataaactatcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgat 314  Q
    |||| |||||||||||| | |||| || | || ||||||| | ||| |||||||||| || ||||||| |  | |||| |||||||||||||| |||| |    
T  37273148 ataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T
Q  315 tatgc 319  Q
    |||||    
T  37273248 tatgc 37273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 26716595 - 26716558
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  26716595 atagcataaacacttattatataagtgcttatgtataa 26716558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 8578533 - 8578567
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgta 209  Q
    ||||||||| |||||||||||||||||||||||||    
T  8578533 atagcataagcacttatcatataagtgcttatgta 8578567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 44236797 - 44236735
Alignment:
Q  297 aacagtctcacaagtgattatgccttttgataaacttaaataagttactccaaacaagctctt 359  Q
    |||||||||||||||| |||||||  | |||||||| ||||||| || |||||||| ||||||    
T  44236797 aacagtctcacaagtgcttatgccagtagataaactcaaataaggtaatccaaacaggctctt 44236735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 5226513 - 5226550
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  5226513 atagcataaacatttatcatataagtgtttatgtataa 5226550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 8603612 - 8603649
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  8603612 atagcataagcacttaccatataagtgcttatgtataa 8603649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 11813263 - 11813230
Alignment:
Q  176 tagcataaacacttatcatataagtgcttatgta 209  Q
    |||||||||| |||||||||||||||||||||||    
T  11813263 tagcataaacgcttatcatataagtgcttatgta 11813230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 12972767 - 12972804
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||| || |||||||||||||||||||||||||    
T  12972767 atagcataagcatttatcatataagtgcttatgtataa 12972804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 27320227 - 27320264
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  27320227 atagcataaacacttatcacataagtgcttacgtataa 27320264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 34563161 - 34563198
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  34563161 atagcataaacatttatcatataagtgcttatatataa 34563198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 35869748 - 35869785
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  35869748 atagcataagcacttatcatataagttcttatgtataa 35869785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 26813963 - 26813927
Alignment:
Q  176 tagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  26813963 tagcacaaaaacttatcatataagtgcttatgtataa 26813927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 40438982 - 40439019
Alignment:
Q  176 tagcataaacacttatcatataagtgcttatgtataac 213  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  40438982 tagcataaacactaatcatataagtgcttatgtataac 40439019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 39345515 - 39345587
Alignment:
Q  245 agctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgattat 317  Q
    |||||||| | | ||| |||||||||| ||| |||||| | || ||||||||||||||||||||||| |||||    
T  39345515 agctgaaagcaacttatggacatgtcataaactgtttccatgaactctaccaaacagtctcacaagtaattat 39345587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 19624135 - 19624174
Alignment:
Q  173 taatagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  19624135 taatagcataaacacttatcatataagggcttatatataa 19624174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 3610895 - 3610862
Alignment:
Q  179 cataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||| ||||||||||||||||||||||    
T  3610895 cataaacacttgtcatataagtgcttatgtataa 3610862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 33894721 - 33894778
Alignment:
Q  295 caaacagtctcacaagtgattatgccttttgataaacttaaataagttactccaaaca 352  Q
    |||||||||||||||||| ||||| | |||||||| || ||||||| || ||||||||    
T  33894721 caaacagtctcacaagtgcttatgtcatttgataagctcaaataagctaatccaaaca 33894778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 45078205 - 45078241
Alignment:
Q  176 tagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||  |||||||||||||||||||||||||    
T  45078205 tagcataaacgtttatcatataagtgcttatgtataa 45078241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 6738566 - 6738529
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6738566 atagcataaacacttatcatataagtacttatgtataa 6738529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 27104573 - 27104536
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27104573 atagcataaacacttatcatataagtgcttacgtataa 27104536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 318
Target Start/End: Complemental strand, 10272480 - 10272384
Alignment:
Q  222 atcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgattatg 318  Q
    |||||||||||  ||||||| | |||||||||| | |||| ||||||||| || |||||||||  | | || ||||| |||| ||||||||||||||    
T  10272480 atcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgtttctataagcactcccaaatagtcacacaagtgattatg 10272384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 10391265 - 10391301
Alignment:
Q  176 tagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||||||||||||||||||||| ||||||    
T  10391265 tagcataaacacttatcatataagtgcttacgtataa 10391301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 3951528 - 3951565
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  3951528 atagcataaatgcttatcatataagtgcttatgtataa 3951565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 26516209 - 26516246
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  26516209 atagcataagcgcttatcatataagtgcttatgtataa 26516246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 29115372 - 29115335
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  29115372 atagcataaacatttatcataaaagtgcttatgtataa 29115335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 29588791 - 29588828
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  29588791 atagcataaacactttttatataagtgcttatgtataa 29588828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 32059743 - 32059710
Alignment:
Q  179 cataaacacttatcatataagtgcttatgtataa 212  Q
    |||||| |||||||||||||||||||||||||||    
T  32059743 cataaatacttatcatataagtgcttatgtataa 32059710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 39063802 - 39063765
Alignment:
Q  178 gcataaacacttatcatataagtgcttatgtataacta 215  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39063802 gcataaccacttatcatataagtgcttatgtataacta 39063765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 7368036 - 7367973
Alignment:
Q  289 ctctaccaaacagtctcacaagtgattatgccttttgataaacttaaataagttactccaaaca 352  Q
    |||| ||||||||||||||||| | |||||||| | |||||||| |||||||| | ||||||||    
T  7368036 ctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaaca 7367973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 24193496 - 24193533
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  24193496 atagcataaacgcttatcatataagtacttatgtataa 24193533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 24443949 - 24443986
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  24443949 atagcataagcacttatcatataagttcttatgtataa 24443986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 25409797 - 25409830
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgt 208  Q
    |||||||||||||||||||||||| |||||||||    
T  25409797 atagcataaacacttatcatataactgcttatgt 25409830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 44319861 - 44319898
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  44319861 atagcataagcacttatcatataagtgctcatgtataa 44319898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 46860280 - 46860317
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  46860280 atagcataaacacttatgatataagtgcttatgaataa 46860317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 52114 - 52062
Alignment:
Q  160 cttaattaagtcataatagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||||   |||||||||||| ||||| |||||||||||||||||||||    
T  52114 cttaattaagctctaatagcataaagacttaacatataagtgcttatgtataa 52062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 4363790 - 4363754
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtata 211  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4363790 atagcataaacacttgtcatataagtgcttatgtata 4363754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 16980742 - 16980774
Alignment:
Q  180 ataaacacttatcatataagtgcttatgtataa 212  Q
    ||||| |||||||||||||||||||||||||||    
T  16980742 ataaatacttatcatataagtgcttatgtataa 16980774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 3528820 - 3528883
Alignment:
Q  218 aactatcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgttt 281  Q
    |||||||||||||||| ||||||| | || ||||||| ||||| |||||||||| || ||||||    
T  3528820 aactatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgttt 3528883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 1497891 - 1497924
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgt 208  Q
    |||||||||||||||||||| |||||||||||||    
T  1497891 atagcataaacacttatcatttaagtgcttatgt 1497924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 31668844 - 31668807
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    ||||||||| || |||||||||||||||||||||||||    
T  31668844 atagcataagcaattatcatataagtgcttatgtataa 31668807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 5930 - 5967
Alignment:
Q  175 atagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  5930 atagcataaacatttatcatataagtgtttatgtataa 5967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 6791 - 6759
Alignment:
Q  180 ataaacacttatcatataagtgcttatgtataa 212  Q
    |||| ||||||||||||||||||||||||||||    
T  6791 ataagcacttatcatataagtgcttatgtataa 6759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 1248 - 1196
Alignment:
Q  160 cttaattaagtcataatagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||  | |||||||||||   ||||||||||||||||||||||||    
T  1248 cttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataa 1196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 2727 - 2779
Alignment:
Q  160 cttaattaagtcataatagcataaacacttatcatataagtgcttatgtataa 212  Q
    |||||||||||  | |||||||||||   ||||||||||||||||||||||||    
T  2727 cttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataa 2779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 116710 - 116678
Alignment:
Q  180 ataaacacttatcatataagtgcttatgtataa 212  Q
    |||| ||||||||||||||||||||||||||||    
T  116710 ataagcacttatcatataagtgcttatgtataa 116678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University