View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12685_high_3 (Length: 431)
Name: NF12685_high_3
Description: NF12685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12685_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 35808363 - 35808766
Alignment:
| Q |
18 |
aatcacacaattcagaacaattacaacaaaataagggaaagggggtgataacagcattaaaatatataaggaatttgaacgaaatcatcgacagtttcat |
117 |
Q |
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| T |
35808363 |
aatcacacaattcagaacaattacaacaaaataagggaaagggggtgataacagcattaaaatatataaggaatttgaacgaaatcatcgacagtttcat |
35808462 |
T |
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| Q |
118 |
ttcgagtaaacgattgagacgaagaactgtgacttaaattatcactgaagtcactgcaagtgaaaaactcaggaaaaggtggcaaactaacatttgaatt |
217 |
Q |
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| T |
35808463 |
ttcgagtaaacgattgagacgaagaactgtgacttaaattatcactgaagtcactgcaagtgaaaaactcaggaaaaggtggcaaactaacatttgaatt |
35808562 |
T |
|
| Q |
218 |
catcatatcattggaaaaagaagaagtaggagtagcagcagccgcagcgcaacgagccagacgatcctttgcaatggcaagatcatgttgaagttcaacc |
317 |
Q |
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| T |
35808563 |
catcatatcattggaaaaagaagaagtaggagtagcagcagccgcagcgcaacgagccaggcgatcctttgcaatggcaagatcatgttgaagttcaacc |
35808662 |
T |
|
| Q |
318 |
atcttcctttgcaaaagtgctatagcacctatgcatccatagacagggtctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccc |
417 |
Q |
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| T |
35808663 |
atcttcctttgcaaaagtgctatagcacctatgcatccatagacagggtctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccc |
35808762 |
T |
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| Q |
418 |
tttg |
421 |
Q |
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| T |
35808763 |
tttg |
35808766 |
T |
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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 32036245 - 32036399
Alignment:
| Q |
267 |
caacgagccagacgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggt |
366 |
Q |
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|||||||| ||||| ||||| |||||||| | |||||| |||||||| | ||||||||||||||| | ||||| | ||| |||||||| || || |||| |
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| T |
32036245 |
caacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatggaaccaatgcatccgtaaactgggt |
32036344 |
T |
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| Q |
367 |
ctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttg |
421 |
Q |
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||||||||||||| |||||||||||||| | ||||||||| || ||||| ||||| |
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| T |
32036345 |
ctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
32036399 |
T |
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