View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12685_low_2 (Length: 541)
Name: NF12685_low_2
Description: NF12685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12685_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 523
Target Start/End: Original strand, 1775135 - 1775642
Alignment:
| Q |
16 |
tcactgtttcttgtactttactttttacttatagttatctttctctttggtagatttttggtactacatagtagaaagtgacgaaaatctttgctaattt |
115 |
Q |
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| T |
1775135 |
tcactgtttcttgtactttactttttacttatagttaactttctctttggtagatttttggtactacatag---aaagtgacgaaaatctttgctaattt |
1775231 |
T |
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| Q |
116 |
aaaaggttgtcttataaatattcaaactgataaatgaagcttcacgtttagaaattttttagtctttgcatcattgagtgttgagaatggc---tattat |
212 |
Q |
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| T |
1775232 |
aaagggctgtcttataaatattcaaactgatgaatgaagcttcacgtttagaaattttttagtttttgcatcattgagtgttgagaatggcatctattat |
1775331 |
T |
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| Q |
213 |
agctatagtactaatatttgtggggttagtgttttatgtcctattgcgtatgtgtcttccttatgggatttacaggattatgagagttgataggggaaga |
312 |
Q |
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| T |
1775332 |
agctatagtactaatatttgtggggctagtgttttatgtcctattgcgtatgtgtcttccttatgggatttacaggattatgagagttgataggggaaga |
1775431 |
T |
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| Q |
313 |
agaagcctttccaaagttgatttggagaagcttccatgttatgattatgttgcaaaagaaaatggaagtaaccctttagattgtgcaatttgtttggaga |
412 |
Q |
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| T |
1775432 |
agaagcctttccaaagttgatttagagaagcttccatgttatgattatgttgcaaaagaaaatggaagtaaccctttagattgtgcaatttgtttggaga |
1775531 |
T |
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| Q |
413 |
atttcactattggggataagtgtagattgttgcctatttgtgagcacaattttcatgctcaatgtgtggatcaatggcttttgaggaattccatttgtcc |
512 |
Q |
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| T |
1775532 |
atttcactattggggataagtgtagattgttgcctatttgtgagcacaattttcatgctcaatgtgtggatcaatggcttttgaggaattccatttgtcc |
1775631 |
T |
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| Q |
513 |
aatttgtagat |
523 |
Q |
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| T |
1775632 |
aatttgtagat |
1775642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 312 - 523
Target Start/End: Original strand, 1768678 - 1768892
Alignment:
| Q |
312 |
aagaagcctttccaaagttgatttggagaagcttccatgttatgattatgttgcaaaagaaaatggaagtaaccctttagat---tgtgcaatttgtttg |
408 |
Q |
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| T |
1768678 |
aagaagcatttccaaaactgatttggagaagcttccatgttatgattatgttgcagaagaaaatggaagtaaccctttggatatttgtgcaatttgtttg |
1768777 |
T |
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| Q |
409 |
gagaatttcactattggggataagtgtagattgttgcctatttgtgagcacaattttcatgctcaatgtgtggatcaatggcttttgaggaattccattt |
508 |
Q |
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| T |
1768778 |
gagaatttcactattggggataagtgtagattgttgcctatttgtaagcacatttttcatgctcaatgtgtggataaatggctattgaagactccaattt |
1768877 |
T |
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| Q |
509 |
gtccaatttgtagat |
523 |
Q |
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| T |
1768878 |
gtcctatttgtagat |
1768892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 299 - 523
Target Start/End: Original strand, 1766025 - 1766246
Alignment:
| Q |
299 |
ttgataggggaagaagaagcctttccaaagttgatttggagaagcttccatgttatgattatgttgcaaaagaaaatggaagtaaccctttagattgtgc |
398 |
Q |
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| T |
1766025 |
ttgataggggaagaagaagaatttccaaaattgatttggagaatcttccatgttatgattatgttgtt---gatcatagaactagcactattgattgtgc |
1766121 |
T |
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| Q |
399 |
aatttgtttggagaatttcactattggggataagtgtagattgttgcctatttgtgagcacaattttcatgctcaatgtgtggatcaatggcttttgagg |
498 |
Q |
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| T |
1766122 |
aatttgcttggagaatttcactattggggataaatgtagattgttacctatttgcaagcatagctttcatgctcaatgtgtggatcaatggcttttgaag |
1766221 |
T |
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| Q |
499 |
aattccatttgtccaatttgtagat |
523 |
Q |
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| T |
1766222 |
catcccatttgtccaatttgtagat |
1766246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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