View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12685_low_3 (Length: 458)
Name: NF12685_low_3
Description: NF12685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12685_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Complemental strand, 1177028 - 1176589
Alignment:
| Q |
11 |
acatcaaaatctacctcagagtcataacgccaggctttgtattgcatatttggtgttgacctttccataaaactttgccagtcaatctctccgtctttcc |
110 |
Q |
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| T |
1177028 |
acatcaaaatctacctcagagtcataacgccaggctttgtattgcatatttggtgttgacctttccataaaactttgccagtcaatctctccgtctttcc |
1176929 |
T |
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| Q |
111 |
cttcaagaagatgaagaagatgttccaaatcagcctctgtaactgtatctttgtctctctcgtcggccttatcaccggacctaatgtatgcgcaataacc |
210 |
Q |
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| T |
1176928 |
cttcaagaagatgaagaagatgttccaaatcagcctctctaactgtatctttgtctctctcgtcggctttatcaccggacctaatgtatgtgcaataacc |
1176829 |
T |
|
| Q |
211 |
aagttccaaaatgaataaaacacttcattcttccgctagaaatacagtacaatatatcaaacaaccatccaggaactagaagtgaccacttacataggaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1176828 |
aagttccaaaatgaataaaacacttcattcttccgctagaaatacagtacaatatatcaaacaaccatccaggaactagaagtgaccacttacataggaa |
1176729 |
T |
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| Q |
311 |
catcaatttgataattaatgtttgtgcgcatttatgaaatccatgatacagtagaaagaagctcattgtcatatttaaggaaattagacacacacagaag |
410 |
Q |
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| T |
1176728 |
catcaatttgataattaatgtttgggcgcatttatgaaatccatgatacagtagaaagaagctcattgtcatatttaaggaaattagacacacacagaag |
1176629 |
T |
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| Q |
411 |
aaatgggnnnnnnntcctaaacatagaatcacagtgaacg |
450 |
Q |
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| T |
1176628 |
aaatgggaaaaaaatcctacacatagaatcacagtgaacg |
1176589 |
T |
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