View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12685_low_6 (Length: 398)
Name: NF12685_low_6
Description: NF12685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12685_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 39583065 - 39582696
Alignment:
| Q |
19 |
tgagaatgaatagaatattgatgcaaattttaataatgtggcagtctactaatttaagttttaaattagctgaaatagtacatcaataaataactcaata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39583065 |
tgagaatgaatagaatattgatgcaaattttaatattgtggcagtctactaatttaagttttaaattagctgaaatagtacatcaataaataactcaata |
39582966 |
T |
|
| Q |
119 |
agcgtaccttttgaaagttttaaacaaacnnnnnnnnnn-ctcacgttttacgcacaccatatataactatataagcatgtttaagaagcacaatcttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39582965 |
agcgtaccttttgaaagttttaaacaaacaaaaaaaaaaactcacgttttacgcacaccatatataactatataagcatgtttaagaagcacaatcttct |
39582866 |
T |
|
| Q |
218 |
agttcagattttcgttttttgtacaagatatcatataaatgttccaagaaacttcatatatagttcatatttcatggtacccagctgcttgattcgtcga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39582865 |
agttcagattttcgttttttgtacaagatatcatataaatgttccaagaaacttcatatatagttcatatttcatggtacccagctgcttgattcgtcga |
39582766 |
T |
|
| Q |
318 |
gactgttctgttactaaataaaaattctcatctctccctccctctctcaagtgtcttctgttttgttctt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39582765 |
gactgttctgttactaaataaaaattctcatctctccctccctctctcaagtgtcttccgttttgttctt |
39582696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University