View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12685_low_9 (Length: 244)
Name: NF12685_low_9
Description: NF12685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12685_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 33005804 - 33006020
Alignment:
| Q |
15 |
gaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtggttgaaatt |
114 |
Q |
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| T |
33005804 |
gaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtggttgaagtt |
33005903 |
T |
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| Q |
115 |
gaacaaagcaaactcaacgattcgcgaaaagatggcatggatttagtaacaccaagttcaagttgcatggtaacttcttgtggtaggtcttgnnnnnnna |
214 |
Q |
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| T |
33005904 |
gaacaaagcaaactcaacgattcgcgaaaagatggcatggatttagtaacaccaagttcaagttgcatggtaacttcttgtggtaggtcttgttttttta |
33006003 |
T |
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| Q |
215 |
ttggagggaggaaagtg |
231 |
Q |
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| T |
33006004 |
ttggagggaggaaagtg |
33006020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 3707272 - 3707137
Alignment:
| Q |
25 |
aaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtg---gttgaaattgaacaaa |
121 |
Q |
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| T |
3707272 |
aaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggtgtgcatgttgaagttgaacaca |
3707173 |
T |
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| Q |
122 |
gcaaactcaacgattcgcgaaaagatggcatggatt |
157 |
Q |
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| T |
3707172 |
gtaacctcaacgagttgcgaagagatggcatggatt |
3707137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 3718791 - 3718646
Alignment:
| Q |
15 |
gaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtg---gttgaa |
111 |
Q |
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| T |
3718791 |
gaagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggtgtgcatgttgaa |
3718692 |
T |
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| Q |
112 |
attgaacaaagcaaactcaacgattcgcgaaaagatggcatggatt |
157 |
Q |
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| T |
3718691 |
attgaacaaagtaacctcaacaagttccgaagacatggcatggatt |
3718646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3700603 - 3700548
Alignment:
| Q |
16 |
aagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgc |
71 |
Q |
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| T |
3700603 |
aagtatatgaaagataagaggttgaactcttttgctatttctaatgcttgggttgc |
3700548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 3778574 - 3778645
Alignment:
| Q |
15 |
gaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaac |
86 |
Q |
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| T |
3778574 |
gaagtatacgaaagataagaggtttaagtcttttgctatttctaatgcatgacttgcaaaaggatcaacaac |
3778645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 3770923 - 3770993
Alignment:
| Q |
25 |
aaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctac |
95 |
Q |
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| T |
3770923 |
aaagataagatgttctagtcttttgctatttctaatgcttgacttgcataaggatcaacaaccaatgctac |
3770993 |
T |
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