View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12686_high_4 (Length: 443)
Name: NF12686_high_4
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 1117183 - 1116761
Alignment:
| Q |
11 |
cagagacaatatgagcattttaccattacatgagattaactatgatgcataacaaaatcaaacaacactatactataatattctatcaagtaagcactga |
110 |
Q |
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| T |
1117183 |
cagagacaatatgagcattttaccattacatgagattaactatgatgcataacaaaatcaaacaacactatactataatattctatcaagtaagcactga |
1117084 |
T |
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| Q |
111 |
tgacaataaagaaacaactagtttagaatacaattgaatagatgaatgaggattcagcaagttagttagttacctcagtattgctgcattgcattataga |
210 |
Q |
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| T |
1117083 |
tgacaataaagaaacaactagtttagaatacaattgaatagatgaatgaggattcagcaagttagttagttacctcagtattgctgcattgcattataga |
1116984 |
T |
|
| Q |
211 |
acatccaacagaagcccaatattcctacgacaacaacaacaataaaagataggttttttaactttaaaaatgaaatataaaatgacccttttgaaattta |
310 |
Q |
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| T |
1116983 |
acatccaacagaagcccaatattcctacgacaacaacaacaataaaagataggttttttaactttaaaaatgaaatataaaatgacccttttgaaattta |
1116884 |
T |
|
| Q |
311 |
gtgctcacagacttcagaaaacacaaaatttacagaaaattgttttnnnnnnntggtgaagtgggattgttgaatgtttaagacctgaaggcgttgaatt |
410 |
Q |
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| T |
1116883 |
gtgctcacagacttcagaaaacacaaaatttacagaaaattgttttaaaaaaatggtgaagtgggattgttgaatgtttaagacctgaaggcgttgaatt |
1116784 |
T |
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| Q |
411 |
gcttgctgaaaagtgagagatga |
433 |
Q |
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| T |
1116783 |
gcttgctgaaaagtgagagatga |
1116761 |
T |
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