View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12686_high_5 (Length: 443)
Name: NF12686_high_5
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 48663082 - 48662647
Alignment:
| Q |
1 |
ttcaattattatcaaagaccatagtgtccattaatttgatcacatcacatgtaggcaacattgtgacatgctggactaacagcgtgaatgaaaacattac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48663082 |
ttcaattattatcaaagaccatagtgtccattaatttgatcacatcacatgtaggcaacattgtgacatgctggactaacagcgtgaatgaaaacattac |
48662983 |
T |
|
| Q |
101 |
atatcagcaaaaagaatcaaaatttgttatggaggtttcgttagggactaaagtgtctcggttgtgcgggactaaaaattgtattttttattgtgaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
48662982 |
atatcagcaaaaagaatcaaaatttgttatggaggttttgttagggactaaagtgtctcggttgtgagggactaaaagttgtattttttattgtgaggaa |
48662883 |
T |
|
| Q |
201 |
ccaaaccgagtctcagttttgtaaggactagaatgagtcttcactctagtagtaagtcataagtttaaaagctacttgaagtatcttatcaagaaatgtt |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48662882 |
ccaaaccgagtctcagttttttaaggactagaatgaatcttcactctagtggtaagtcataagtttcaaagctacttgaagtatcttatcaagaaatgtt |
48662783 |
T |
|
| Q |
301 |
acaagcaactcagataaactctgatatcaaatacatctaaacatacttataagttataagctagtcaaataagataaaactttcctatttatctaagcaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48662782 |
acaagcaactcagataaactctgatatcaaatacatctaaacatacttataagttataagctagtcaaataagataaaactttccgatttatctaagcaa |
48662683 |
T |
|
| Q |
401 |
tcatagtcttattcatagagctttttgtctgtgctc |
436 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |
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|
| T |
48662682 |
tcatagtcttattcatagagctttttgtctgcgctc |
48662647 |
T |
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