View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12686_low_1 (Length: 564)
Name: NF12686_low_1
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 31303067 - 31302662
Alignment:
| Q |
16 |
aggggaaattgagatagaaaaataagagaaaggtata----cgtgatacatgctctggtagaaatggaagagaggcagaaagaagtacaagtattatatg |
111 |
Q |
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| T |
31303067 |
aggggaaattgagatagaaaaataagacaaaggtatatagacgtgatacatgctctggtagaaatggaagagagacagaaagaagtacaagtattatatg |
31302968 |
T |
|
| Q |
112 |
ctcctttaggctttggacggtatatccttttcttctagtagcatctttttgacttgtgttatctaaagacaaaattttaggcacaatatgtgacaacata |
211 |
Q |
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| T |
31302967 |
ctcctttaggctttggacggtatatccttttcttctagtagcatctttttgacttgtgttatctaaagacaaaattttaggcacagtatgtgacaacata |
31302868 |
T |
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| Q |
212 |
attttatctctatatctaagggtataaaaactaaatgaatgatcaaatgaacttcaagatctaatccaaaccaattaaatttgttag-gnnnnnnnnncc |
310 |
Q |
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| T |
31302867 |
attttatctctatatctaagggtataaaaactaaatgaatgatcaaatgaacttcaagatctaatccaaaccaattaaatttgttagttttttttttttc |
31302768 |
T |
|
| Q |
311 |
aattaagtttgagtccaaaccaatgaaatcgatctcaattaatttgggtatcggttttacgtctttcaaaaacaatcactcaaaaacaaatatgttgtgc |
410 |
Q |
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| T |
31302767 |
aattaagtttgagtccaaaccaatgaaatagacctcaattaatttgggtatcggttctacgtcattcaaaaccaatcactcaaaaacaaatatgttgtgc |
31302668 |
T |
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| Q |
411 |
tatctt |
416 |
Q |
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| T |
31302667 |
tatctt |
31302662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 443 - 548
Target Start/End: Complemental strand, 31302463 - 31302358
Alignment:
| Q |
443 |
atttcacactatattagtagtattatcttaaaaattatgttgtgttcgtgtattcttttactcgttgtataatattattatttttattgtgacatatata |
542 |
Q |
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| T |
31302463 |
atttcacactatattagtagtattatcttaaaaattatgttgtgttcgtgtattcttttactcattgtataatattattatttttattgtgacatatata |
31302364 |
T |
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| Q |
543 |
cttatt |
548 |
Q |
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| T |
31302363 |
cttatt |
31302358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 485
Target Start/End: Original strand, 54001207 - 54001253
Alignment:
| Q |
439 |
ttttatttcacactatattagtagtattatcttaaaaattatgttgt |
485 |
Q |
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| T |
54001207 |
ttttatttcatactatattagtagtgttatcttaaaaaatattttgt |
54001253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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