View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12686_low_10 (Length: 257)
Name: NF12686_low_10
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 35334467 - 35334224
Alignment:
| Q |
1 |
agaaaatgatctaaatggaaggagaattaacactaagaataatcactaaaagaatgaaagcactaggctttaggcatcaccggcacatattttataaata |
100 |
Q |
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| T |
35334467 |
agaaaatgatctaaatggaaggagaattaacactaagaataatcactaaaagaatgaaagcactaggctttaggcatcaccggcacatattttataaata |
35334368 |
T |
|
| Q |
101 |
caagactctatttaccacagattcgtagaaacattaacataagaaacacgacacattattattaacaacagaaaagatatatagataattgatatgaacc |
200 |
Q |
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| T |
35334367 |
caagactctatttaccacagattcgtagaaacattaacataagaaacacgacacattattattaacaacagaaaagatatatagataattgatatgaacc |
35334268 |
T |
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| Q |
201 |
ttccagcgggagaagctagaatcatgttttgttcggtcacattg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35334267 |
ttccagcgggagaagctagaatcatgttttgttcggtcacattg |
35334224 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 34827199 - 34827251
Alignment:
| Q |
192 |
atatgaaccttccagcgggagaagctagaatcatgttttgttcggtcacattg |
244 |
Q |
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|||||||||||||| | |||||||||||||||||||| || |||||||||| |
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| T |
34827199 |
atatgaaccttccaatgagagaagctagaatcatgtttagtgtggtcacattg |
34827251 |
T |
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