View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12686_low_2 (Length: 518)
Name: NF12686_low_2
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 505
Target Start/End: Complemental strand, 39091808 - 39091329
Alignment:
| Q |
16 |
acaattacattaacagaagaaatataaactaatgtcctacattaatcgtaacatagacnnnnnnnnngtacacagtacattatttgattgtcattgatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39091808 |
acaattacattaacagaagaaatataaactaatgtcctacattaatcgtaacatagacaaaaaaaa-gtacacagtacattatttgattgtcattgatga |
39091710 |
T |
|
| Q |
116 |
atcaatataatatgttctgtctttggatatgaccaaaccccacacaatcagtggaaacnnnnnnnnnnnnnnnnnnngtaatccctggcatactattgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39091709 |
atcaatataatatgttctgtctttggatatgaccaaaccccacacaatcagtggaaactatatatatat--------gtaatccctggcatactattgat |
39091618 |
T |
|
| Q |
216 |
ctattatacacttaccttagtagtatatattgagatcaattagaagacattctaaatgcgtccccatnnnnnnngaattcaggtcttggtgatccctagt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
39091617 |
ctattatacacttaccttagtagtatatattgagatcaattagaagacattctaaatgcgtccccataaaaaaa-aattcaggtcttgatgatccctagt |
39091519 |
T |
|
| Q |
316 |
ttttgttcttgaagtgatacaaaatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagtcccagacttatcaaccacactca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39091518 |
ttttgttcttgaagtgatacaaaatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagtcccagacttatcaaccacactca |
39091419 |
T |
|
| Q |
416 |
aaagcttacatacatgaatattgatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccactagttgcttctgtg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39091418 |
aaagcttacatacatgaatattgatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccactagttgcttctgtg |
39091329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 494
Target Start/End: Original strand, 44714272 - 44714428
Alignment:
| Q |
338 |
aatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagtcccagacttatcaaccacactcaaaagcttacatacatgaatatt |
437 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| ||||| | | |||||| ||||||||||| |
|
|
| T |
44714272 |
aatgtttaacatcaccaatgtgaagactatgttctcccattggaattctcctaatcccagatttatcaactacactaagcaacttacaaacatgaatatt |
44714371 |
T |
|
| Q |
438 |
gatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccactag |
494 |
Q |
| |
|
| || || | ||||| || ||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
44714372 |
tactctaaccctttgcttagtcttggcaggaacatgaactttctcaaaagcaactag |
44714428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University