View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12686_low_6 (Length: 381)
Name: NF12686_low_6
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 364
Target Start/End: Original strand, 42636479 - 42636831
Alignment:
| Q |
12 |
agatgaactaaacagaacagattattcagtagtgcttatttcagttcataatgatatatttagaaatccaaagacatattgtggcactaatactatcatc |
111 |
Q |
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| T |
42636479 |
agatgaactaaacagaacagattattcaatagtgcttatttcagttcataatgatatatttagaaatccaaggacatattgtggcactaatactatcatc |
42636578 |
T |
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| Q |
112 |
ttgcttagataaagattattcaactatttcaaggaccttatatagcactgccctgaaaaatattacatgcgtatttacttcaagaatttattgcggactt |
211 |
Q |
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| T |
42636579 |
ttgcttagataaagattattcaactatttcaaggaccttatatagcactgccctgaaaaatattacatgcggatttacttcaagaatttattgcggaatt |
42636678 |
T |
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| Q |
212 |
tgggataacattgcaggaaatgtgttgtgtctacaaagcacaataaatttagaaggcaatttctgtcgaatttgaaaatccacgaaggttttagggtgta |
311 |
Q |
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| T |
42636679 |
tgggataacattgcaggaaatgtgttgtgtctacaaagcacaataaatttagaaggcaatttctgtcgaatttgaaaatccactaaggttttagggtgta |
42636778 |
T |
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| Q |
312 |
cctgagatccaaagtcctcataaattttcgcaggaaataagaacatatgaatg |
364 |
Q |
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| T |
42636779 |
cctgagatccaaagtcctcgtaaattttcgcaggaaataagaacatatgaatg |
42636831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 20458532 - 20458569
Alignment:
| Q |
105 |
tatcatcttgcttagataaagattattcaactatttca |
142 |
Q |
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| T |
20458532 |
tatcatcttgcttagataaagatcattcaactatttca |
20458569 |
T |
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