View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12686_low_7 (Length: 375)
Name: NF12686_low_7
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 41655722 - 41655369
Alignment:
| Q |
1 |
aaactatacaagaataaacttgacggttcaatttattatgataaataaagacaagtgaaaactaagggcagggaggataaacctcttaaaaatctaataa |
100 |
Q |
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| T |
41655722 |
aaactatacaagaataaactcgaccgttcaatttattatgataaataaagacaagtgaaaactaagggcagggaggataaccctcttaaaaatctaataa |
41655623 |
T |
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| Q |
101 |
aagcaggcatatcattgttcctaattaatcaagatacaccaaatgaaagaataccactgttgtccttcttcccattttgtttcattcttttatattcatt |
200 |
Q |
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| T |
41655622 |
aagcaggcatatcattgttcctaattaattaagatacaccaaa-------------ctagtttcattcttcccattttgtttcattcttttatattcatt |
41655536 |
T |
|
| Q |
201 |
ttcatccatctaactagtttaaatttgtgcattggaagatccatcaacaatttaaacacaagtacgcacatgtgtgtgtgcgcatgcatgcacaattgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
41655535 |
ttcatccatctaactagtttaaatttgtgcattggaagatccatcaacaatttaaacacaagtacgcacatgtgtgtgcgcgcacacatgcacaattgta |
41655436 |
T |
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| Q |
301 |
cctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgattttctgtacctttgct |
367 |
Q |
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| T |
41655435 |
cctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgagtttctgcacctttgct |
41655369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 28812768 - 28812838
Alignment:
| Q |
297 |
tgtacctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgattttctgtacctttgct |
367 |
Q |
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| T |
28812768 |
tgtacctgtggtaagtgcatatatatgtagttctttgctgtagttggattgtgattttccgcacctttgct |
28812838 |
T |
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