View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12686_low_8 (Length: 295)
Name: NF12686_low_8
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 4056138 - 4056035
Alignment:
| Q |
18 |
catagcactttagatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttcaaattgtttccctgtgcaaaaatatagtgttgtc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4056138 |
catagcactttagatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttcaaattgtttccctgtgcaaaaatatagtgttgtc |
4056039 |
T |
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| Q |
118 |
cttg |
121 |
Q |
| |
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|||| |
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| T |
4056038 |
cttg |
4056035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 4055966 - 4055878
Alignment:
| Q |
190 |
cagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgttgcggagtattacaagaagctctta |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4055966 |
cagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgttgcggagtattacaagaagctctta |
4055878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 25067669 - 25067772
Alignment:
| Q |
18 |
catagcactttagatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttcaaattgtttccctgtgcaaaaatatagtgttgtc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25067669 |
catagcactttagatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttcaaattgtttccctgtgcaaaaatatagtgttgtc |
25067768 |
T |
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| Q |
118 |
cttg |
121 |
Q |
| |
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|||| |
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|
| T |
25067769 |
cttg |
25067772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 25067841 - 25067929
Alignment:
| Q |
190 |
cagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgttgcggagtattacaagaagctctta |
278 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25067841 |
cagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgttgcggagtattacaagaagctctta |
25067929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 794604 - 794501
Alignment:
| Q |
18 |
catagcactttagatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttcaaattgtttccctgtgcaaaaatatagtgttgtc |
117 |
Q |
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|||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
794604 |
cataacactttaaatttacaattaaatgaaaacgaaatatgatttcagttctgatatattctcttccaattgtttccttgtgcaaaaatatagtgttgtc |
794505 |
T |
|
| Q |
118 |
cttg |
121 |
Q |
| |
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|||| |
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|
| T |
794504 |
cttg |
794501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 794432 - 794344
Alignment:
| Q |
190 |
cagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgttgcggagtattacaagaagctctta |
278 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
794432 |
cagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataagaaagaagtcatgttgcggagtattacaagaagctctta |
794344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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