View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12686_low_9 (Length: 273)
Name: NF12686_low_9
Description: NF12686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12686_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 12924764 - 12925007
Alignment:
| Q |
20 |
actaggaccaagtgaatccaccaaaatccaacctcatatactttattattaaggaatagtactactaatatgtagagcaatcaaccacagagttcaaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12924764 |
actaggaccaagtgaatccaccaaaatccaacctcatatactttattattaaggaatggtactactaatatgtagagcaatcaacca--gagttcaaaca |
12924861 |
T |
|
| Q |
120 |
gcaacataatcaatgtctac---taattaaatgtagcaaaagaaattttaaataaaatgttaaaaccattaatttttacagcctagtaggttaaaatgtg |
216 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12924862 |
gcaacatgatcaatgtctactactaattaaatgtagcaaaagaaattataaataaaatgttaaaaccattaatttttacagcctagtaggttaaaatgtg |
12924961 |
T |
|
| Q |
217 |
gccaactaattggaggcacaattttcttttcacctttgggtttctt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12924962 |
gccaactaattggaggcacaattttcttttcacctttgggtttctt |
12925007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University