View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12687_high_6 (Length: 318)
Name: NF12687_high_6
Description: NF12687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12687_high_6 |
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| [»] scaffold0212 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 1132230 - 1132372
Alignment:
| Q |
12 |
atgaattaacaaatatgaagcaagatgagcggaacttccaaatgaagcttctc-tcgaggtgcttttccaacccctctcttatgcattcgggggtgccct |
110 |
Q |
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| T |
1132230 |
atgaattaacaaatatgaagcaagatgagcggaacttccaaatgaagcttctcctcgaggtgcttttccaacccctctcttatgcattcgggggtgccct |
1132329 |
T |
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| Q |
111 |
ccttagagttggctcatgtctgctatcaggccttttgtcctcg |
153 |
Q |
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| T |
1132330 |
cctttgagttggctcatatctgctataaggctttttgtcctcg |
1132372 |
T |
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Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 1132453 - 1132587
Alignment:
| Q |
181 |
acaacaaggatgatgatgacgacaacgatgacaaaaaatattttaaaataagattgttactaaatataatgatcaattgagtgagcaaaaagacaaacac |
280 |
Q |
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| T |
1132453 |
acaacaaggatgatgatgac---aacgatgacaaacaatattttaaaataagatcgttactaaagatactgatcaattgagtgagcaaaaagacaaacac |
1132549 |
T |
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| Q |
281 |
gacacattgatattcaagagacatcaaatagttattat |
318 |
Q |
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| T |
1132550 |
cacacattgatattcaagagacatcaaatagttattat |
1132587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0212 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 1177 - 1078
Alignment:
| Q |
38 |
gagcggaacttccaaatgaagcttctctcgaggtgcttttccaacccctctcttatgcattcgggggtgccctccttagagttggctcatgtctgctatc |
137 |
Q |
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| T |
1177 |
gagcggaacttctaactgaagcttctcacggggtccttttccaacccctctcttatgcgttcgggggtgccctcctttgagttggctcatgtctgctatc |
1078 |
T |
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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 54352 - 54324
Alignment:
| Q |
133 |
ctatcaggccttttgtcctcgtaagcaac |
161 |
Q |
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| T |
54352 |
ctatcaggccttttgtcctcgtaagcaac |
54324 |
T |
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