View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12688_high_1 (Length: 550)

Name: NF12688_high_1
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12688_high_1
NF12688_high_1
[»] chr8 (5 HSPs)
chr8 (248-540)||(10278564-10278856)
chr8 (18-164)||(10278919-10279066)
chr8 (278-326)||(16249679-16249727)
chr8 (278-326)||(16312889-16312937)
chr8 (278-326)||(34801214-34801262)
[»] chr6 (3 HSPs)
chr6 (278-342)||(23409729-23409793)
chr6 (346-385)||(3531853-3531892)
chr6 (304-342)||(9450045-9450083)
[»] chr7 (3 HSPs)
chr7 (295-334)||(26247071-26247110)
chr7 (402-480)||(20181470-20181548)
chr7 (276-326)||(29912973-29913023)
[»] chr4 (1 HSPs)
chr4 (298-342)||(17449754-17449798)
[»] chr3 (1 HSPs)
chr3 (278-326)||(19817044-19817092)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 248 - 540
Target Start/End: Complemental strand, 10278856 - 10278564
Alignment:
Q  248 aaaatgagagtatatagaatatagtgagattcaactaacaaatgccttataattttaaatgtctaataaacgtgtatttcgtcaacttatcataaaatat 347  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10278856 aaaataagcgtatatggaatatagtgagattcaactaacaaatgccttataattttaaatgtctaataaacgtgtatttcgtcaacttatcataatatat 10278757  T
Q  348 tttaagataaaaaattaagcaaatgacatccaagaactnnnnnnntaatccattataatattgtgactttcagaagatccaccattaagtttgatcatca 447  Q
    ||||||||||||||||||||||||||||||||||||||       || | |||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  10278756 tttaagataaaaaattaagcaaatgacatccaagaactaaaaaaatagttcattataatattgtgactttcagaagatcctccattaagtttgatcatga 10278657  T
Q  448 cattatattgagagaaaccacaccaatgaatttgatctataactatagtagtttttatgattttatataattagattagataccgtacctatg 540  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10278656 cattatattgagagaaaccacaccaatgagtttgatctataactatagtagtttttatgattttatataattagattagataccgtacctatg 10278564  T

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Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 10279066 - 10278919
Alignment:
Q  18 ctatctcttaagtgtgagactctccgcacatatgtaatttggtgacattgtcaa-taaggtcagtttgaggcacaacatggtaagcaaagtggattggtg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10279066 ctatctcttaagtgtgagactctccgcacatatgtaatttggtgacattgtcaaataaggtcagtttgaggcacaacatggtaagcaaagtggattggtg 10278967  T
Q  117 gtggtttcaaggaagaagacttttgttcatttctttcatgagaataga 164  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  10278966 gtagtttcaaggaagaagacttttgttcatttctttcatgagaataga 10278919  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 16249679 - 16249727
Alignment:
Q  278 tcaactaacaaatgccttataattttaaatgtctaataaacgtgtattt 326  Q
    |||| ||| |||||||  ||||||||||||||||||||||| |||||||    
T  16249679 tcaattaagaaatgccacataattttaaatgtctaataaacatgtattt 16249727  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 16312889 - 16312937
Alignment:
Q  278 tcaactaacaaatgccttataattttaaatgtctaataaacgtgtattt 326  Q
    |||| ||| |||||||  ||||||||||||||||||||||| |||||||    
T  16312889 tcaattaagaaatgccacataattttaaatgtctaataaacatgtattt 16312937  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 34801262 - 34801214
Alignment:
Q  278 tcaactaacaaatgccttataattttaaatgtctaataaacgtgtattt 326  Q
    |||| ||| |||||||  ||||||||||||||||||||||| |||||||    
T  34801262 tcaattaagaaatgccacataattttaaatgtctaataaacatgtattt 34801214  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 23409729 - 23409793
Alignment:
Q  278 tcaactaacaaatgccttataattttaaatgtctaataaacgtgtatttcgtcaacttatcataa 342  Q
    |||| ||| |||||||  ||||||||||||||||||||||| ||||||| || |||| |||||||    
T  23409729 tcaattaagaaatgccacataattttaaatgtctaataaacatgtattttgtgaactcatcataa 23409793  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 3531853 - 3531892
Alignment:
Q  346 attttaagataaaaaattaagcaaatgacatccaagaact 385  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  3531853 attttaagataaaaaattaaacaaatgacatccaaaaact 3531892  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 9450045 - 9450083
Alignment:
Q  304 aaatgtctaataaacgtgtatttcgtcaacttatcataa 342  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  9450045 aaatgtctaataaacgtgtattttgtcaacttagcataa 9450083  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 26247071 - 26247110
Alignment:
Q  295 tataattttaaatgtctaataaacgtgtatttcgtcaact 334  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  26247071 tataattttaaatgtctaataaacatgtattttgtcaact 26247110  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 20181548 - 20181470
Alignment:
Q  402 ataatattgtgactttcagaagatccaccattaagtttgatcatcacattatattgagagaaaccacaccaatgaattt 480  Q
    ||||| |||||||||| ||  ||||||  | | |||||||||||| ||||||||| ||||||||||||| | |||||||    
T  20181548 ataatgttgtgacttttaggggatccaaaactgagtttgatcatcccattatattaagagaaaccacacaagtgaattt 20181470  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 29913023 - 29912973
Alignment:
Q  276 attcaactaacaaatgccttataattttaaatgtctaataaacgtgtattt 326  Q
    |||||| ||| |||||||  ||||||||||||||||||||||| |||||||    
T  29913023 attcaattaagaaatgccacataattttaaatgtctaataaacatgtattt 29912973  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 17449798 - 17449754
Alignment:
Q  298 aattttaaatgtctaataaacgtgtatttcgtcaacttatcataa 342  Q
    ||||| ||||||||||| ||||||||||| ||||||||| |||||    
T  17449798 aatttaaaatgtctaattaacgtgtattttgtcaacttagcataa 17449754  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 19817044 - 19817092
Alignment:
Q  278 tcaactaacaaatgccttataattttaaatgtctaataaacgtgtattt 326  Q
    |||| ||| |||||||  ||||||||||||||||||||||| |||||||    
T  19817044 tcaattaagaaatgccacataattttaaatgtctaataaacatgtattt 19817092  T

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