View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12688_high_7 (Length: 307)
Name: NF12688_high_7
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12688_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 1715004 - 1714727
Alignment:
| Q |
20 |
taatttacatatattatatattgaataaattgattccctcaagnnnnnnnnnctagattaaattgatattgaataatttgaacctatgatgcaggaagag |
119 |
Q |
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| T |
1715004 |
taatttacatatattatatattgaataagttgattccctcaagaaaaaaa--ctagaataaattgatattgaataatttgaacctatgatgcaggaagag |
1714907 |
T |
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| Q |
120 |
ttggaaaaacttgaaacaataggtgaatcttccacagtctgcaatgagtaagcaaagcaaaaacaaatactttttaaattagatttgtgctatttttcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1714906 |
ttggaaaaacttgaaacaataggtgaatcttccacagtctgcaatgagtaagcaaagcaaaaacaaatactttttaaattagatttgtgctatttttcat |
1714807 |
T |
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| Q |
220 |
cattgaatggtccattcattgtgcttttaattaatttgcagtgtcatttcaagcgttgaatccatgccagatcctatgct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1714806 |
cattgaatggtccattcattgtgcttttaattaatttgcagtgtcatttcaagcgttgaatccatgccagatcctatgct |
1714727 |
T |
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