View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12688_low_12 (Length: 243)
Name: NF12688_low_12
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12688_low_12 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0559 (3 HSPs) |
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| [»] scaffold0415 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 40805816 - 40805580
Alignment:
| Q |
7 |
acaaaaaatggccaaagtttatccacatcaagaatccatcaactgcatctctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttcac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805816 |
acaaaaaatggccaaagtttatccacatcaagaatccatcaactgcatctctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttcac |
40805717 |
T |
|
| Q |
107 |
tccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgagttgaaaactatgacagaaagggtggaagagaagtaaatctgatgaatctaa |
206 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40805716 |
tccaatggttgtactgcctatgattcaaatggtgacatcgtttaccgagttgaaaactatgacagaaagggtggaagagaagtaaatctcatgaatctaa |
40805617 |
T |
|
| Q |
207 |
aaggaaacgttctctgcaccatcaaaaaggtatctac |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40805616 |
aaggaaacgttctctgcaccatcaaaaaggtatctac |
40805580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 40812460 - 40812281
Alignment:
| Q |
56 |
tctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttcactccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgag |
155 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||| ||| |||||||||| |||| |
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| T |
40812460 |
tctaataaaagagaaacatatactgtatggatgaaatcacttgttctccactccaatggttgcactgtctatgattcaaagggtaacatcgtttatcgag |
40812361 |
T |
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| Q |
156 |
ttgaaaactatgacagaaagggtggaagagaagtaaatctgatgaatctaaaaggaaacgttctctgcaccatcaaaaag |
235 |
Q |
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|||| |||||||||| || |||||||||||||| ||||| ||| ||||| |||| || ||||||||||||||||||||| |
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| T |
40812360 |
ttgataactatgacaagaaaggtggaagagaagtgaatctcatggatctacaaggcaatgttctctgcaccatcaaaaag |
40812281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 40826278 - 40826098
Alignment:
| Q |
58 |
taataaaagagaaacgtatactgtatggatgaaatcacttgttcttcactccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgagtt |
157 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||||| ||||| || ||||| |||| ||||||||||||||| ||||||||| |||||| |
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| T |
40826278 |
taataaaagagaaacatatactgtgtggatgaaatcacttgttctacactctaatggttgcactgtttatgattcaaatggtagcatcgtttatcgagtt |
40826179 |
T |
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| Q |
158 |
gaaaactatgacagaaagggtggaagagaagtaaatctgatgaatctaaaaggaaacgttctctgcaccatcaaaaaggta |
238 |
Q |
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|||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| |||||||| || || ||||||||| |
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| T |
40826178 |
gaaaactatgacagaaagggtggaagggaagttactctcatgaatctaaaaggaaatgttctctgtacaataaaaaaggta |
40826098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 40817619 - 40817440
Alignment:
| Q |
56 |
tctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttcactccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgag |
155 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| ||| |||||||||| |||| |
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| T |
40817619 |
tctaataaaagagaaacatatactgtatggatgaaatcacttgttcttcactccaatggttgcactgtctatgattcaaacggtaacatcgtttatcgag |
40817520 |
T |
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| Q |
156 |
ttgaaaactatgacagaaagggtggaagagaagtaaatctgatgaatctaaaaggaaacgttctctgcaccatcaaaaag |
235 |
Q |
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|||| |||||||||| ||| ||| |||||||||| ||||| ||| ||||| |||| || |||| ||||||||||||||| |
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| T |
40817519 |
ttgataactatgacaaaaaaggtagaagagaagtgaatctaatggatctacaagggaatcttctttgcaccatcaaaaag |
40817440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 40807363 - 40807184
Alignment:
| Q |
56 |
tctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttcactccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgag |
155 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||| ||| |||||||||| || | |
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| T |
40807363 |
tctaataaaagagagagatatactgtatggatgaaatcacttgttctacactccaatggttgcactgtctatgattcaaagggtaacatcgtttatcgtg |
40807264 |
T |
|
| Q |
156 |
ttgaaaactatgacagaaagggtggaagagaagtaaatctgatgaatctaaaaggaaacgttctctgcaccatcaaaaag |
235 |
Q |
| |
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|||| ||||| |||| ||| ||| ||||||||| ||||| ||| ||| | |||| || |||||||||||||||||||| |
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| T |
40807263 |
ttgataactacgacaaaaaaggtaaaagagaagtcaatctcatggatcaacaaggcaatcttctctgcaccatcaaaaag |
40807184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 40812524 - 40812487
Alignment:
| Q |
7 |
acaaaaaatggccaaagtttatccacatcaagaatcca |
44 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
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| T |
40812524 |
acaaaaaatggccaaagttcatccacatcaagaatcca |
40812487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 8827 - 9057
Alignment:
| Q |
7 |
acaaaaaatggccaaagttt-atccacatcaagaatccatcaactgcatctctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttca |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8827 |
acaaaaaatggccaaagttttatccacatcaagaatccatcaactgcatctctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttca |
8926 |
T |
|
| Q |
106 |
ctccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgagttg-aaaactatgacagaaagggtggaagagaagtaaatctgatgaatct |
204 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8927 |
ctccaatggttgtactgcctatgattcaaatggtgacatcgtttaccgagttgaaaaactatgacagaaagggtggaagagaagtaaatctcatgaatct |
9026 |
T |
|
| Q |
205 |
-aaaaggaaacgttctctgcaccatcaaaaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
9027 |
aaaaaggaaacgttctctgcaccatcaaaaa |
9057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 3848 - 3698
Alignment:
| Q |
58 |
taataaaagagaaacgtatactgtatggatgaaatcacttgttcttcactccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgagtt |
157 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||||| ||||| || ||||| |||| ||||||||||||||| ||||||||| |||||| |
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| T |
3848 |
taataaaagagaaacatatactgtgtggatgaaatcacttgttctacactctaatggttgcactgtttatgattcaaatggtagcatcgtttatcgagtt |
3749 |
T |
|
| Q |
158 |
gaaaactatgacagaaagggtggaagagaagtaaatctgatgaatctaaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | ||| |||||||||||| |
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|
| T |
3748 |
gaaaactatgacagaaagggtggaagggaagttactctcatgaatctaaaa |
3698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 7263 - 7442
Alignment:
| Q |
56 |
tctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttcactccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgag |
155 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||| ||| |||||||||| || | |
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|
| T |
7263 |
tctaataaaagagagagatatactgtatggatgaaatcacttgttctacactccaatggttgcactgtctatgattcaaagggtaacatcgtttatcgtg |
7362 |
T |
|
| Q |
156 |
ttgaaaactatgac-agaaagggtggaagagaagtaaatctgatgaatctaaaaggaaacgttctctgcaccatcaaaaa |
234 |
Q |
| |
|
|||| ||||| ||| | ||| ||| ||||||||| ||||| ||| ||| | |||| || ||||||||||||||||||| |
|
|
| T |
7363 |
ttgataactacgacaaaaaaaggtaaaagagaagtcaatctcatggatcaacaaggcaatcttctctgcaccatcaaaaa |
7442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 14745 - 14924
Alignment:
| Q |
56 |
tctaataaaagagaaacgtatactgtatggatgaaatcacttgttcttcactccaacggttgtactgcctatgattcaaatggtgacatcgtttaccgag |
155 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| ||| |||||||||| |||| |
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| T |
14745 |
tctaataaaagagaaacatatactgtatggatgaaatcacttgttcttcactccaatggttgcactgtctatgattcaaacggtaacatcgtttatcgag |
14844 |
T |
|
| Q |
156 |
ttgaaaactatgacagaaagggtggaagagaagtaaatctgatgaatctaaaaggaaacgttctctgcaccatcaaaaag |
235 |
Q |
| |
|
|||| |||||||||| ||| ||| |||||||||| ||||| ||| ||||| |||| || |||| ||||||||||||||| |
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|
| T |
14845 |
ttgataactatgacaaaaaaggtagaagagaagtgaatctaatggatctacaagggaatcttctttgcaccatcaaaaag |
14924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 14683 - 14718
Alignment:
| Q |
9 |
aaaaaatggccaaagtttatccacatcaagaatcca |
44 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
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|
| T |
14683 |
aaaaaatggccaaagttcatccacatcaagaatcca |
14718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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