View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12688_low_13 (Length: 241)

Name: NF12688_low_13
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12688_low_13
NF12688_low_13
[»] chr7 (3 HSPs)
chr7 (113-224)||(11314980-11315091)
chr7 (1-58)||(11314870-11314927)
chr7 (1-58)||(45052544-45052601)
[»] chr8 (1 HSPs)
chr8 (1-58)||(29635298-29635355)
[»] chr6 (1 HSPs)
chr6 (1-58)||(5491681-5491738)
[»] chr4 (2 HSPs)
chr4 (110-175)||(25051594-25051659)
chr4 (9-57)||(25051510-25051558)
[»] chr5 (3 HSPs)
chr5 (112-175)||(30669692-30669755)
chr5 (1-58)||(30669583-30669640)
chr5 (9-58)||(35877762-35877811)
[»] scaffold0385 (2 HSPs)
scaffold0385 (5-58)||(11050-11103)
scaffold0385 (121-172)||(11163-11214)
[»] chr3 (2 HSPs)
chr3 (1-58)||(41766032-41766089)
chr3 (118-175)||(41766146-41766203)
[»] chr2 (1 HSPs)
chr2 (1-58)||(20355381-20355438)
[»] chr1 (1 HSPs)
chr1 (1-58)||(41122115-41122172)


Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 11314980 - 11315091
Alignment:
Q  113 cttcccatggatgagaagaaacaggggagagagttgcaatatttgttattttccaattatgcctctctattgcatnnnnnnngacaaaaacgtaaatata 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||       |||||||||| |||||||    
T  11314980 cttcccatggatgagaagaaacaggggagagaattgcaatatttgttattttccaattatgcccctctattgcataaaaaaagacaaaaacgcaaatata 11315079  T
Q  213 aatggttatgct 224  Q
    ||||||||||||    
T  11315080 aatggttatgct 11315091  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11314870 - 11314927
Alignment:
Q  1 gaagttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| ||||    
T  11314870 gaagttgaagagagagaaataggagagaagtcctacacttctcttgtttggttctggt 11314927  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45052544 - 45052601
Alignment:
Q  1 gaagttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||||||||||||||| |||||||||  | |||||||||||||||||||||||    
T  45052544 gaagttgaagagagagaaataggagagaagtcttgcatttctcttgtttggttgtggt 45052601  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29635298 - 29635355
Alignment:
Q  1 gaagttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||    
T  29635298 gaagttgaagagagagaaataggagagaagtcccacacttctcttgtttggttgtggt 29635355  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5491681 - 5491738
Alignment:
Q  1 gaagttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||||||||||||||| |||||||||  |||||| ||||||||||||||||||    
T  5491681 gaagttgaagagagagaaataggagagaagtcatacattgctcttgtttggttgtggt 5491738  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 25051594 - 25051659
Alignment:
Q  110 agtcttcccatggatgagaagaaacaggggagagagttgcaatatttgttattttccaattatgcc 175  Q
    ||||||| |||||||| ||||||| ||||||||||||| |||||||| |||| |||||||||||||    
T  25051594 agtcttctcatggatgggaagaaataggggagagagttccaatatttcttatcttccaattatgcc 25051659  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 25051510 - 25051558
Alignment:
Q  9 agagagagaaataagagagaagttctacatttctcttgtttggttgtgg 57  Q
    ||||||||| ||| ||||||||||||||| ||||| |||||||||||||    
T  25051510 agagagagagataggagagaagttctacacttctcatgtttggttgtgg 25051558  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 30669692 - 30669755
Alignment:
Q  112 tcttcccatggatgagaagaaacaggggagagagttgcaatatttgttattttccaattatgcc 175  Q
    ||||| |||||||||| ||||||||| |||||||||||||| ||||  ||||||||||||||||    
T  30669692 tcttctcatggatgaggagaaacaggcgagagagttgcaatttttgcaattttccaattatgcc 30669755  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30669583 - 30669640
Alignment:
Q  1 gaagttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||||||||||||||| ||||||||| || || |||| |||||||||||||||    
T  30669583 gaagttgaagagagagaaataggagagaagtccttcacttctgttgtttggttgtggt 30669640  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 35877811 - 35877762
Alignment:
Q  9 agagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||| |||| |||||||| | ||| ||||||||||||||||||||    
T  35877811 agagagagagataaaagagaagtccaacacttctcttgtttggttgtggt 35877762  T

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Target: scaffold0385 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 11050 - 11103
Alignment:
Q  5 ttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||    
T  11050 ttgaagagagagagataggagagaagttctacacttctcatgtttggttgtggt 11103  T

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Target: scaffold0385; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 11163 - 11214
Alignment:
Q  121 ggatgagaagaaacaggggagagagttgcaatatttgttattttccaattat 172  Q
    ||||| ||||||| ||||||||||||| |||||||| |||| ||||||||||    
T  11163 ggatgggaagaaataggggagagagttccaatatttcttatcttccaattat 11214  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41766032 - 41766089
Alignment:
Q  1 gaagttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||||||||||||||| ||||||| | ||||| ||||||||||||| ||||||    
T  41766032 gaagttgaagagagagaaataggagagaaatcctacacttctcttgtttggctgtggt 41766089  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 41766146 - 41766203
Alignment:
Q  118 catggatgagaagaaacaggggagagagttgcaatatttgttattttccaattatgcc 175  Q
    |||||||||||||||||||| |||||||||||||| ||||  |||||||| |||||||    
T  41766146 catggatgagaagaaacaggcgagagagttgcaatctttgcaattttccagttatgcc 41766203  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20355438 - 20355381
Alignment:
Q  1 gaagttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    ||||||||||||||||||||| ||||||||| | ||  ||||| ||||||||||||||    
T  20355438 gaagttgaagagagagaaataggagagaagtcccactcttctcctgtttggttgtggt 20355381  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41122115 - 41122172
Alignment:
Q  1 gaagttgaagagagagaaataagagagaagttctacatttctcttgtttggttgtggt 58  Q
    |||||||||||||||||  || |||||||| |   |||||||||||||||||||||||    
T  41122115 gaagttgaagagagagagttaggagagaagatgagcatttctcttgtttggttgtggt 41122172  T

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