View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12688_low_15 (Length: 231)
Name: NF12688_low_15
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12688_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 34353089 - 34353294
Alignment:
| Q |
12 |
agcacagacaaaataagcaaa-----acaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttggg |
106 |
Q |
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| T |
34353089 |
agcacagacaaaataagcaaaacaaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcgttgctagtttggg |
34353188 |
T |
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| Q |
107 |
attcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaagga |
206 |
Q |
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| T |
34353189 |
attcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggctgatacggcaggcacgaaaagcacaagacaaagacttcactaagga |
34353288 |
T |
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| Q |
207 |
ggaaga |
212 |
Q |
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|||||| |
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| T |
34353289 |
ggaaga |
34353294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 34358735 - 34358919
Alignment:
| Q |
30 |
aaaacaaaacaaaaatagtgt--gaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatggaag |
127 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| |||||| |
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| T |
34358735 |
aaaacaaaacaaaaatagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaag |
34358834 |
T |
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| Q |
128 |
acgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaaga |
212 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
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| T |
34358835 |
acgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaaga |
34358919 |
T |
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