View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12688_low_17 (Length: 223)
Name: NF12688_low_17
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12688_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 1145629 - 1145496
Alignment:
| Q |
14 |
gaagaaacaaacaggccaaagttccatctttttatgatttcccaattgtgccctttcattgcatcataaaagacc--nnnnnnnntacaccagaagtctg |
111 |
Q |
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| T |
1145629 |
gaagaaacaaacaggccaaagttccatctttttatgatttcccaattgtgccctttcattgcatcataaaagaccaaaaaaaaaatacaccagaagtctg |
1145530 |
T |
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| Q |
112 |
gaacgttgtgcatagctaacatgagagaatgaca |
145 |
Q |
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| T |
1145529 |
gaacgttgtgcatagctaacatgagagaatgaca |
1145496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 1145455 - 1145390
Alignment:
| Q |
141 |
tgacacaatcagttttggttttttatcaaatggatgataatcaatgtggctaagtttgataatatt |
206 |
Q |
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| T |
1145455 |
tgacacaatcagttttggttttttatcaaatggatgataatcaatgtggctaagtttgataatatt |
1145390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 18279422 - 18279459
Alignment:
| Q |
169 |
aatggatgataatcaatgtggctaagtttgataatatt |
206 |
Q |
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| T |
18279422 |
aatggatgataatcaatgtggcaaagtttgataatatt |
18279459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 27801560 - 27801597
Alignment:
| Q |
50 |
atttcccaattgtgccctttcattgcatcataaaagac |
87 |
Q |
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| T |
27801560 |
attttccaattgtaccctttcattgcatcataaaagac |
27801597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 30725060 - 30725023
Alignment:
| Q |
50 |
atttcccaattgtgccctttcattgcatcataaaagac |
87 |
Q |
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| T |
30725060 |
attttccaattgtaccctttcattgcatcataaaagac |
30725023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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