View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12688_low_2 (Length: 510)
Name: NF12688_low_2
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12688_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 48 - 502
Target Start/End: Original strand, 14965622 - 14966074
Alignment:
| Q |
48 |
ggaatgttgcattttagtaaaaatggtagttacctttaattgtctttatttgtatctaagagatgtcaacttaatggttaaagctttgttttgtaatttc |
147 |
Q |
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| T |
14965622 |
ggaatgttgcattttagtaaaaatggtagttacctttaattgtctttatttgtgtctaagagatgtcaacttaatgtttagagctttgttttgtaatttc |
14965721 |
T |
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| Q |
148 |
atagatacaatatatggcatattagaaaataatatgatgtagtaaattgtttgtctagtatgattggaggtgcgattgagggatcttggcataagtcatg |
247 |
Q |
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| T |
14965722 |
atagatacaatatatggcatattagaacataatatgatgtagtaaattgtttgtctagtatgatcggaggtgcgattgagggatcttggcagaagtcatg |
14965821 |
T |
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| Q |
248 |
agagagaagcaagggttgagtgctcttctatctcttcctgatgcttttgtttttactggtaggagacattgtgttctgacctattggaagcaagagttga |
347 |
Q |
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| T |
14965822 |
agagagaagcaagggttgagtgctcttctatctcttcctgatgcttttatttttactagtaggagacattgtgttctgacctattggaagcaagagttga |
14965921 |
T |
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| Q |
348 |
gtgctcttctctctcttctaggttaaaattagaacaaaaagtataagtaccattagtttatattttgtggtatattacaggacctgcgatctttgggatg |
447 |
Q |
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| T |
14965922 |
gtgctcttctctcttttctaggttaaaattagaataaaaag--taagtaccattagtttatattttgtggtatattacaggacctgcgatctttgggatg |
14966019 |
T |
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| Q |
448 |
atgatattgaatgatctttgagtagtacatttttggcagttgttgccttcatctc |
502 |
Q |
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| T |
14966020 |
atgatattgaatgacttttgagtagtacactttcggcagttgctgcattcttctc |
14966074 |
T |
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