View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12688_low_4 (Length: 455)
Name: NF12688_low_4
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12688_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 28041753 - 28042192
Alignment:
| Q |
1 |
aatccactaaccgggccttcttctatataatgtggggtcatcaaaatcaatccaacccatttctctttctcttacagaacgacaacgctcttcgatttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28041753 |
aatccactaaccgggccttcttctatataatgtggggtcatcaaaatcaatccaacccatttctctttctcttacagaacgacaacgctcttcgattcga |
28041852 |
T |
|
| Q |
101 |
ttctcatcactttcacaaagcaaaaaccctaaaatttcacaatcttcaaatcaaaccctacaatgtcttcatcagaggtagttatccacacattctctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041853 |
ttctcatcactttcacaaagcaaaaaccctaaaatttcacaatcttcaaatcaaaccctacaatgtcttcatcagaggtagttatccacacattctctca |
28041952 |
T |
|
| Q |
201 |
aacccaatcagaaaccaaaccttccaccgccgtaacaaccaccgtcgccaccacctcttccgatcccaacaccaaactcaccgtccgaagacctgcctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041953 |
aacccaatcagaaaccaaaccttccaccgccgtaacaaccaccgtcgccaccacctcttccgatcccaacaccaaactcaccgtccgaagacctgcctct |
28042052 |
T |
|
| Q |
301 |
cgatccaccaaagaccgtcacaccaaagttaacggccgtggccgccgtgtccgtatgccgccactctgcgccgctagaatcttccagctcacacgtgagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28042053 |
cgatccaccaaagaccgtcacaccaaagttaacggccgtggccgccgtgtccgtatgccgccactctgcgccgctagaatcttccagctcacacgtgagc |
28042152 |
T |
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| Q |
401 |
taggtcaccgttccgacggtgaaacaatcgagtggcttct |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
28042153 |
taggtcaccgttccgacggtgaaacaatcgagtggcttct |
28042192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 44960750 - 44960659
Alignment:
| Q |
304 |
tccaccaaagaccgtcacaccaaagttaacggccgtggccgccgtgtccgtatgccgccactctgcgccgctagaatcttccagctcacacg |
395 |
Q |
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||||||||||||||||| |||||||| | |||||||||||||| |||| |||||| |||| || || |||||| | || ||||| ||||| |
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| T |
44960750 |
tccaccaaagaccgtcataccaaagtagaaggccgtggccgccgcatccgaatgccggcactttgtgctgctagagtttttcagcttacacg |
44960659 |
T |
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