View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12688_low_5 (Length: 425)
Name: NF12688_low_5
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12688_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 16749799 - 16750187
Alignment:
| Q |
18 |
aaccaatccttctcagtttccatagaaaacattaaacttccaatacttttaagagcaagcggtacccctaaacatctttttgaaatttccttgccaattg |
117 |
Q |
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| T |
16749799 |
aaccaatccttctcagtttccatagaaaacattaaacttccaatacttttatgagcaagaggtacccctgaacatttttttgaaatttccttgccaattg |
16749898 |
T |
|
| Q |
118 |
acaaccaaattggattctctgattcttttcaattctcaaaagctaattgactgagaaaattcaaagattgtttttcatctagacccttcaaagagaagag |
217 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||| |
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| T |
16749899 |
acacccaaattggattctctgattcttttcgattctcaaaagctaattgactgaacaaattccaagattgtttttcatcaagaccctttaaagagaagag |
16749998 |
T |
|
| Q |
218 |
ggaagatgttccacttatcttggccaccgtctcgctccttgtagttatgacaattttacttccttttgctccatccatcaacaatgtcatcaactgaagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
16749999 |
ggaagatgttccacttatcttggccaccgtctcgctccttgtagttatgacaattttacttccttttgctccatccctcaacagtgtcatcaactgaagc |
16750098 |
T |
|
| Q |
318 |
caattttcacggtcctcattccacatgtcatctaaaatgagcaaatatctatttccgtcaatttttgtacggagttcttgttgcacttg |
406 |
Q |
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| T |
16750099 |
caattttcacgctcctcattccacatgtcatctaaaatgagcaaatatctatttccgtcaatttttgtacggagttcttgttgcacttg |
16750187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 367
Target Start/End: Original strand, 7128649 - 7128867
Alignment:
| Q |
149 |
attctcaaaagctaattgactgagaaaattcaaagattgtttttcatctagacccttcaaagagaagagggaagatgttccacttatcttggccaccgtc |
248 |
Q |
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||||||||||||||||||||| | || || |||||||||||||| |||||||| ||| | |||| ||||||| |||||| |||||| ||| || |
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| T |
7128649 |
attctcaaaagctaattgactaaataatgtccaagattgtttttcactgagaccctttaaaaacaagatagaagatgaaccacttgccttggcaaccttc |
7128748 |
T |
|
| Q |
249 |
tcgctccttgtagttatgacaattttacttccttttgctccatccatcaacaatgtcatcaactgaagccaattttcacggtcctcattccacatgtcat |
348 |
Q |
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|| || ||||| || || | ||||||||||||| ||| || || |||||||||||||||| ||||||||| ||||| ||||||||||| |||||| |
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| T |
7128749 |
tcacttcttgtggtgataattattttacttccttctgcgccgtctttcaacaatgtcatcaattgaagccaaagatcacgatcctcattccaattgtcat |
7128848 |
T |
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| Q |
349 |
ctaaaatgagcaaatatct |
367 |
Q |
| |
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| || | ||||||||||| |
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| T |
7128849 |
ccaagacaagcaaatatct |
7128867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 367
Target Start/End: Complemental strand, 7482489 - 7482271
Alignment:
| Q |
149 |
attctcaaaagctaattgactgagaaaattcaaagattgtttttcatctagacccttcaaagagaagagggaagatgttccacttatcttggccaccgtc |
248 |
Q |
| |
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||||||||||||||||||||| | || || |||||||||||||||| |||||||| ||| ||||| |||||||| |||||| |||||| ||| || |
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| T |
7482489 |
attctcaaaagctaattgactaaataatctccaagattgtttttcatccagaccctttaaattgaagatagaagatgtaccacttgccttggcaaccttc |
7482390 |
T |
|
| Q |
249 |
tcgctccttgtagttatgacaattttacttccttttgctccatccatcaacaatgtcatcaactgaagccaattttcacggtcctcattccacatgtcat |
348 |
Q |
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|| || |||| || || | |||||||||||||||||||| | ||| || | ||||||| | ||||||| ||||| ||||||||||| |||||| |
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| T |
7482389 |
tcacttcttgcggtgataattattttacttccttttgctccgcctttcagcagtctcatcaattcaagccaaagatcacgatcctcattccaattgtcat |
7482290 |
T |
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| Q |
349 |
ctaaaatgagcaaatatct |
367 |
Q |
| |
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| || | ||||||||||| |
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|
| T |
7482289 |
ccaagacaagcaaatatct |
7482271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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