View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12688_low_7 (Length: 365)

Name: NF12688_low_7
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12688_low_7
NF12688_low_7
[»] chr4 (5 HSPs)
chr4 (20-354)||(23587363-23587697)
chr4 (20-361)||(23596208-23596549)
chr4 (43-192)||(54396650-54396799)
chr4 (48-194)||(9335681-9335827)
chr4 (48-177)||(30775484-30775613)
[»] chr7 (15 HSPs)
chr7 (14-361)||(8017036-8017383)
chr7 (14-225)||(8102865-8103076)
chr7 (23-294)||(39985853-39986124)
chr7 (42-177)||(8610143-8610278)
chr7 (48-194)||(13333246-13333392)
chr7 (53-189)||(8585501-8585637)
chr7 (42-194)||(8602200-8602352)
chr7 (48-279)||(8667651-8667882)
chr7 (54-177)||(17268177-17268300)
chr7 (65-171)||(8538285-8538391)
chr7 (48-194)||(10494164-10494310)
chr7 (48-192)||(8659595-8659739)
chr7 (146-279)||(8671335-8671468)
chr7 (59-194)||(3147515-3147650)
chr7 (71-194)||(7877523-7877646)
[»] chr2 (3 HSPs)
chr2 (48-194)||(16657307-16657453)
chr2 (53-192)||(17716485-17716624)
chr2 (104-192)||(12234977-12235065)
[»] chr1 (1 HSPs)
chr1 (48-192)||(4678350-4678494)
[»] chr6 (1 HSPs)
chr6 (53-179)||(11156507-11156633)
[»] chr8 (2 HSPs)
chr8 (59-132)||(42272433-42272506)
chr8 (59-168)||(42324520-42324629)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 23587697 - 23587363
Alignment:
Q  20 acgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaa 119  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23587697 acgttcttctcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaa 23587598  T
Q  120 tgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgc 219  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23587597 tgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattcttaatcgttgtaccaagataagcctctgc 23587498  T
Q  220 aatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagca 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23587497 aatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcttccgctttgtagttcaccacgatcattggtttgtcagca 23587398  T
Q  320 gggccaggaatgaccttgaacggccacaatttcat 354  Q
    |||||||||||||||||||||||||||||||||||    
T  23587397 gggccaggaatgaccttgaacggccacaatttcat 23587363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 23596549 - 23596208
Alignment:
Q  20 acgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||||||||||||||||    
T  23596549 acgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaa 23596450  T
Q  120 tgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgc 219  Q
    ||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| |||||||||||    
T  23596449 tgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgc 23596350  T
Q  220 aatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagca 319  Q
     ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  23596349 gatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattggtttgtcagca 23596250  T
Q  320 gggccaggaatgaccttgaacggccacaatttcatctcactc 361  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23596249 gggccaggaatgaccttgaacggccacaatttcatgtcactc 23596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 54396650 - 54396799
Alignment:
Q  43 agctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagct 142  Q
    |||||||||||| | |||||||||||| |||||||||||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| ||||||    
T  54396650 agctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagct 54396749  T
Q  143 tgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 192  Q
    ||||| || ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  54396750 tgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 54396799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 9335827 - 9335681
Alignment:
Q  48 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 147  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| || || |  |  ||||| || |||| |||   ||| |||||| | || || |  ||    
T  9335827 tcttatcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcg 9335728  T
Q  148 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 194  Q
    ||| ||||| ||||||||||| ||||| || ||||||||||||||||    
T  9335727 ctgagaatcattgaagtaagctggcacggtaacaacggcattcttga 9335681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 30775484 - 30775613
Alignment:
Q  48 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 147  Q
    |||| ||||| ||||| |||||||| || ||||| || |||||||| |||||||  ||||| || |||| |||| |||| |||||  | || ||||  ||    
T  30775484 tcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcg 30775583  T
Q  148 ctgtgaatcgttgaagtaagcaggcacagt 177  Q
    ||||| ||| ||||| ||||||||||||||    
T  30775584 ctgtgcatcattgaaataagcaggcacagt 30775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 8017383 - 8017036
Alignment:
Q  14 atcatcacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtc 113  Q
    |||| ||| |||||||| |||  ||||||||| || || ||||| || || |||||||| ||||| || || || || ||||||||||| ||||||||||    
T  8017383 atcaacacattcttctcgccaacacttgtagcctttttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtc 8017284  T
Q  114 cagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagc 213  Q
    | | ||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || || || |||||||||||||| |  |||| ||| || |||||    
T  8017283 ctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagc 8017184  T
Q  214 ctctgcaatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttg 313  Q
     || ||||||||   ||| || || || |||||||| || || || ||||| | ||||||||| |||||  | |||||||| ||  | |||||||| ||     
T  8017183 ttcagcaatctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggcttt 8017084  T
Q  314 tcagcagggccaggaatgaccttgaacggccacaatttcatctcactc 361  Q
    ||| |||| |||| ||| ||||| || |||||||| ||||| ||||||    
T  8017083 tcaccaggaccagcaataaccttaaaaggccacaacttcatgtcactc 8017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 8102865 - 8103076
Alignment:
Q  14 atcatcacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtc 113  Q
    |||| ||||||||||||||||  |||||| || || || |||||||| || ||||||||||||||||| || ||||||||||||||||| ||||| |  |    
T  8102865 atcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaac 8102964  T
Q  114 cagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagc 213  Q
    |||  || ||||| |||||||| || ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||| || ||   ||||||||||||    
T  8102965 cagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattcttaatggtgacaccaagataagc 8103064  T
Q  214 ctctgcaatctc 225  Q
     || ||||||||    
T  8103065 ttcggcaatctc 8103076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 39985853 - 39986124
Alignment:
Q  23 ttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatga 122  Q
    |||||||| |||  ||| || |||||||| ||||||||||||||||| ||||||||||| || ||||| ||||||| ||  ||||| || || | ||| |    
T  39985853 ttcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataa 39985952  T
Q  123 caccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaat 222  Q
    | || ||||| || |||||||||||||| || || || ||||||||||| ||||| ||||| |||||||| || |  | |||||| || || || |||||    
T  39985953 ctccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaat 39986052  T
Q  223 ctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagtt 294  Q
    |||   ||| ||||| || ||||| ||||| |||||||| || | ||||| ||| || ||  ||||||||||    
T  39986053 ctcacgcatcttcattagcaccatggaagagatctcttcggcagcaaattccttatcttcacctttgtagtt 39986124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 177
Target Start/End: Original strand, 8610143 - 8610278
Alignment:
Q  42 tagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagc 141  Q
    ||||| |||| | ||||||||| |||| ||| ||||| || |||||||| ||||| |  |  ||||| || |||||||||||||| ||||||||||| ||    
T  8610143 tagctctcttctgaagaccatatgcaagagccgcagccgttggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggc 8610242  T
Q  142 ttgacgctgtgaatcgttgaagtaagcaggcacagt 177  Q
    ||  ||||| ||||| || || ||||||||||||||    
T  8610243 tttccgctgagaatcattaaaataagcaggcacagt 8610278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 13333392 - 13333246
Alignment:
Q  48 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 147  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| || ||||  |  | ||| || |||| |||  |||| |||||| | || || |  ||    
T  13333392 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcg 13333293  T
Q  148 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 194  Q
    ||| ||||| ||||||||||| |||||||| ||||||||||||||||    
T  13333292 ctgagaatcattgaagtaagccggcacagtaacaacggcattcttga 13333246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 8585637 - 8585501
Alignment:
Q  53 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 152  Q
    ||||| ||||| |||||||| |||||||| |||||||| || || ||||  ||||| || |||| |||| |||| |||||  | || ||||  ||||| |    
T  8585637 tcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgag 8585538  T
Q  153 aatcgttgaagtaagcaggcacagttacaacggcatt 189  Q
    |||| ||||| |||||||||||||| ||||| |||||    
T  8585537 aatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 8602200 - 8602352
Alignment:
Q  42 tagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagc 141  Q
    ||||| |||| | ||| ||||| |||| |||||| ||||| || ||||| || || | ||  |||||||| |||| |||| |||| ||||||||||| ||    
T  8602200 tagctctcttttgaaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggc 8602299  T
Q  142 ttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 194  Q
    ||  ||||| ||||| || || ||||| |||||||| ||||| ||||||||||    
T  8602300 ttttcgctgagaatcattaaaataagccggcacagtaacaactgcattcttga 8602352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 279
Target Start/End: Original strand, 8667651 - 8667882
Alignment:
Q  48 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 147  Q
    |||| ||||| ||||| |||||||| || |||||||||||||| || || |  |  ||||| ||||||| |||   ||| |||||| | || || |  ||    
T  8667651 tcttgtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcg 8667750  T
Q  148 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccata 247  Q
    ||| ||||| ||||||||||| |||||||| |||||||||||||||| ||  |  || ||||| ||||| |||| |||   ||| ||  |||| ||||||    
T  8667751 ctgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccata 8667850  T
Q  248 gaagatatctcttcagcggaaaattgcttctc 279  Q
    |||||||| || |||||  |||| ||||||||    
T  8667851 gaagatatttcctcagcacaaaagtgcttctc 8667882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 17268177 - 17268300
Alignment:
Q  54 caagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtga 153  Q
    |||| ||||| |||||||| |||||||| |||||||| || |   |||| ||||| || |||| ||||||||| |||||| | || ||||  ||||| ||    
T  17268177 caaggccatatgcaatagctgcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgaga 17268276  T
Q  154 atcgttgaagtaagcaggcacagt 177  Q
    ||||||||||||||| || |||||    
T  17268277 atcgttgaagtaagccgggacagt 17268300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 8538285 - 8538391
Alignment:
Q  65 gcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagt 164  Q
    |||| ||||||||| ||||||||||| || || | ||  |||||||| |||| ||||||||| |||||||| || |||   ||||||||||| ||||| |    
T  8538285 gcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattgaaat 8538384  T
Q  165 aagcagg 171  Q
    |||||||    
T  8538385 aagcagg 8538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 10494310 - 10494164
Alignment:
Q  48 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 147  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| || || |  |  ||||| || |||| |||  |||| |||||  | ||||| |  ||    
T  10494310 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcg 10494211  T
Q  148 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 194  Q
     || ||||||||||||||||| |||||||| ||||| ||||||||||    
T  10494210 ttgagaatcgttgaagtaagccggcacagtaacaacagcattcttga 10494164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 8659595 - 8659739
Alignment:
Q  48 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaa-cacattgagtccagaaatgacaccggcatcttttgtagcttgac 146  Q
    |||| |||| |||||| |||||||| |||||||||||||||||||| | ||| ||  ||||| || |||| |||| |||||| |||| | || ||||  |    
T  8659595 tcttgtcaaaaccatatgcaatagctgcagcagtaggttcattaatta-tctgaatgacattaaggccagcaatggcaccggaatctatggtggcttttc 8659693  T
Q  147 gctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 192  Q
    |||| ||||| ||||| || |||||||| || ||||| ||||||||    
T  8659694 gctgagaatcattgaactatgcaggcactgtaacaacagcattctt 8659739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 8671468 - 8671335
Alignment:
Q  146 cgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaacca 245  Q
    ||||| ||||| ||||||||||| ||||| || |||||||||||||||| || ||   | ||||| ||||| |||| |||   ||| ||  |||| ||||    
T  8671468 cgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcacca 8671369  T
Q  246 tagaagatatctcttcagcggaaaattgcttctc 279  Q
    |||||||||| || |||||  |||||||||||||    
T  8671368 tagaagatatttcctcagcacaaaattgcttctc 8671335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 3147515 - 3147650
Alignment:
Q  59 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 158  Q
    ||||| |||||||| ||||||||||||||||| || || | ||  | ||| || |||| ||| ||||| |||||| |||| ||||  ||||| | ||| |    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgctttccgctgagcatcat 3147614  T
Q  159 tgaagtaagcaggcacagttacaacggcattcttga 194  Q
    |||| |||||||| || || ||||| ||||||||||    
T  3147615 tgaaataagcaggtacggtaacaactgcattcttga 3147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 7877646 - 7877523
Alignment:
Q  71 gcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcag 170  Q
    ||||||||||| ||||||||||| || | ||  |||||||| || | ||   |||| ||||||||||| ||||  || || ||||| ||||| ||||| |    
T  7877646 gcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccg 7877547  T
Q  171 gcacagttacaacggcattcttga 194  Q
    ||||||| ||||| ||||||||||    
T  7877546 gcacagtaacaactgcattcttga 7877523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 16657453 - 16657307
Alignment:
Q  48 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 147  Q
    |||| ||||||||||| |||||||| ||||||||||||||||| |||||||  |  ||||| || ||||  ||| |||| |||||| | || ||||  ||    
T  16657453 tcttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcg 16657354  T
Q  148 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 194  Q
    ||| ||||| ||||||||||| |||||||| ||||| ||||||||||    
T  16657353 ctgcgaatcattgaagtaagctggcacagtaacaacagcattcttga 16657307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 17716624 - 17716485
Alignment:
Q  53 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 152  Q
    |||| |||||||||||| || |||||||| || ||||||||||||||||  | ||| || |||| |||  |||| ||||  || |||||||| | ||| |    
T  17716624 tcaaaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgag 17716525  T
Q  153 aatcgttgaagtaagcaggcacagttacaacggcattctt 192  Q
    ||   || ||||||||||| ||||| ||||||||||||||    
T  17716524 aaaaattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 12234977 - 12235065
Alignment:
Q  104 acattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 192  Q
    |||||||| |||| ||||||||| |||||| | || ||||  || || ||||| ||||| ||||||||||| || ||||| ||||||||    
T  12234977 acattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 4678494 - 4678350
Alignment:
Q  48 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 147  Q
    |||| |||| |||||| |||||||| ||| |||||||||| || || |||   |  ||||| ||||||| |||| |||| |||||| | |||||||  ||    
T  4678494 tcttgtcaaaaccatatgcaatagctgcaacagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcg 4678395  T
Q  148 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 192  Q
     || ||||| |||||||| ||||||||||| |||||| |||||||    
T  4678394 ttgagaatcattgaagtatgcaggcacagtaacaacgacattctt 4678350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 11156507 - 11156633
Alignment:
Q  53 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 152  Q
    ||||||||||| ||||| ||||| |||| ||| ||||| || |||| ||  |||||||| |||| ||| ||||| |||||||  || |  || || ||||    
T  11156507 tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtg 11156606  T
Q  153 aatcgttgaagtaagcaggcacagtta 179  Q
    | || || |||||||||||||||||||    
T  11156607 agtcattaaagtaagcaggcacagtta 11156633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 42272506 - 42272433
Alignment:
Q  59 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatc 132  Q
    ||||||||||| |||||||| || ||||||||||| |||||   |||||| |  |||| |||||||||||||||    
T  42272506 ccataagcaatggcagcagcggtgggttcattaatgattctagccacattcaaaccagcaatgacaccggcatc 42272433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 42324629 - 42324520
Alignment:
Q  59 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 158  Q
    ||||||||||| |||||||| |||||||| ||||| |||||   |||||| |  |||| ||||||||||||||| || || || || | ||| | ||| |    
T  42324629 ccataagcaatggcagcagcggtaggttcgttaatgattctagccacattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcat 42324530  T
Q  159 tgaagtaagc 168  Q
    ||||||||||    
T  42324529 tgaagtaagc 42324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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