View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12688_low_9 (Length: 306)
Name: NF12688_low_9
Description: NF12688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12688_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 28382997 - 28382724
Alignment:
| Q |
17 |
acttacttggggattaaccctgaaatgactcttatttgcttgtcccatctcttgtttctcgttttaagttctatatctttcattacgtgtttctctctat |
116 |
Q |
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| T |
28382997 |
acttacttggggattaaccctgaaatgactcttatttgcttgtcccatctcttgtttctccttccaagttctatatctttcattacgtgtttctctctat |
28382898 |
T |
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| Q |
117 |
tttttaaacgtgttatcagtaatgaatgactgagagggaaaaaggaaactgacatttattcatagagtgcaaccccctaccaacttccttcctaaaatag |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28382897 |
tttttaaatgtgttatcagtaatgaatgactgagagggaaaaaggaaaccgacagttattcatagagtgcaaccccctaccaacttccttcctaaaatag |
28382798 |
T |
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| Q |
217 |
tggaactaaatcatggattgggaagtggt-------ggtcatatgaacagggaagaagttgtatcttctacttt |
283 |
Q |
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| T |
28382797 |
tggaactaaatcatggagtggaaagtggtgtgtcacggtcatatgaacagggaagaagttgtatctcctacttt |
28382724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 28387344 - 28387074
Alignment:
| Q |
23 |
ttggggattaaccctgaaatgactcttatttgcttgtcccatctcttgtttctcgttttaagttctatatctttcattacgtgtttctctctatttttta |
122 |
Q |
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| T |
28387344 |
ttggggattaatc-tgaaatgactcttatttgcttgtcccttctcttgtttctccttctaagttttatatctttcattacgtgtttctctctatttttta |
28387246 |
T |
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| Q |
123 |
aacgtgttatcagtaatgaatgactgagagggaaaaaggaaactgacatttattcatagagtgcaaccccctaccaacttccttcctaaaatagtggaac |
222 |
Q |
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| T |
28387245 |
aatgtgatatcagtaatgaatgactgagaggaaaaaagggaacggacaattattcatagagtgtaaccctctatcaacttccttcctaaaataatggaac |
28387146 |
T |
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| Q |
223 |
taaatcatggattgggaagtggt-------ggtcatatgaacagggaagaagttgtatcttctactttctag |
287 |
Q |
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| T |
28387145 |
taaatcatggagtggaaagtgatgtgtcacggtcatatgaataaggaagaagttgtatctactactttctag |
28387074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 28657519 - 28657622
Alignment:
| Q |
198 |
aacttccttcctaaaatagtggaactaaatcatggattgggaagtg-------gtggtcatatgaacagggaagaagttgtatcttctactttctagcag |
290 |
Q |
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|||||| ||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||| | |||||||| ||||||| ||||||||||| || |
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| T |
28657519 |
aacttctttcctaaaaaagtggaactaaatcatggagtggaaagtggtgtgtcgtggtcatatgaataaggaagaagctgtatctcctactttctagtag |
28657618 |
T |
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| Q |
291 |
tgaa |
294 |
Q |
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|||| |
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| T |
28657619 |
tgaa |
28657622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 44667717 - 44667627
Alignment:
| Q |
204 |
cttcctaaaatagtggaactaaatcatggattgggaagtggtg-------gtcatatgaacagggaagaagttgtatcttctactttctag |
287 |
Q |
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| T |
44667717 |
cttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatataaacagggaagaagttgtatctcctactttctag |
44667627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 2038020 - 2037924
Alignment:
| Q |
198 |
aacttccttcctaaaatagtggaactaaatcatggattgggaagtggtgg-------tcatatgaacagggaagaagttgtatcttctactttctag |
287 |
Q |
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||||||||| |||||| ||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
2038020 |
aacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaagttgtatcttatactttctag |
2037924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 21508436 - 21508400
Alignment:
| Q |
247 |
gtcatatgaacagggaagaagttgtatcttctacttt |
283 |
Q |
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| T |
21508436 |
gtcatatgaatagggaagaagttgtatctcctacttt |
21508400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 34518815 - 34518863
Alignment:
| Q |
198 |
aacttccttcctaaaatagtggaactaaatcatggattgggaagtggtg |
246 |
Q |
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||||||||| |||||| |||||||||||||||||| ||| |||||||| |
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| T |
34518815 |
aacttccttgctaaaaatgtggaactaaatcatggagtggaaagtggtg |
34518863 |
T |
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