View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12689_high_3 (Length: 387)
Name: NF12689_high_3
Description: NF12689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12689_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 38180711 - 38180375
Alignment:
| Q |
22 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180711 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
38180612 |
T |
|
| Q |
122 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180611 |
tacttacacactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
38180512 |
T |
|
| Q |
222 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180511 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
38180412 |
T |
|
| Q |
322 |
cttagcctacggtatcatcattccttgggtcgcaaag |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180411 |
cttagcctacggtatcatcattccttgggtcgcaaag |
38180375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 38185380 - 38185044
Alignment:
| Q |
22 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
38185380 |
catcatcacatacccactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatc |
38185281 |
T |
|
| Q |
122 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
221 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| || ||| ||||||||||||| |
|
|
| T |
38185280 |
tacttacacactggccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacg |
38185181 |
T |
|
| Q |
222 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
321 |
Q |
| |
|
||||||| || ||||| || ||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185180 |
aagacttcatcgcctacaggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
38185081 |
T |
|
| Q |
322 |
cttagcctacggtatcatcattccttgggtcgcaaag |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185080 |
cttagcctacggtatcatcattccttgggtcgcaaag |
38185044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 38170897 - 38170594
Alignment:
| Q |
22 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
121 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38170897 |
catcataacatacccactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatc |
38170798 |
T |
|
| Q |
122 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
221 |
Q |
| |
|
||||| ||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| || | ||||| | || ||| |
|
|
| T |
38170797 |
cacttatacagtcgccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacg |
38170698 |
T |
|
| Q |
222 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
321 |
Q |
| |
|
||||| | ||| ||||| || |||| ||| ||| ||| |||| |||||||||||||||||||| |||||| |||||| ||| || |||||||||||| |
|
|
| T |
38170697 |
aagacatcgtctcctacatgtctgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttg |
38170598 |
T |
|
| Q |
322 |
ctta |
325 |
Q |
| |
|
|||| |
|
|
| T |
38170597 |
ctta |
38170594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University