View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12689_high_4 (Length: 357)
Name: NF12689_high_4
Description: NF12689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12689_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 17581908 - 17582161
Alignment:
| Q |
20 |
agcagaatcattgctaaccttcgtaacaaaaacaaatcactggtcatttgataaatatgccaagttagataattttatgatgactgatgagaggtctgtc |
119 |
Q |
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| T |
17581908 |
agcagaatcattgctaaccttcgtaacaaaaacaaatcactggt--------aaatatgctaagttagataattttatgatgactgatgagaggtctgtc |
17581999 |
T |
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| Q |
120 |
cttgcctgataattttattaggcaaggagttttcatcatcaaactgttacgattgactgtcggtatnnnnnnntgtttacagtgaaaggtatatctgaat |
219 |
Q |
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| T |
17582000 |
cttgcctgataattttattaggcaaggagttttcatcatcaaactgttacgattgaccgtcgttataaaaaaatgtttacagtgaaaggtatatctgaat |
17582099 |
T |
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| Q |
220 |
taaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaatatggtaactgca |
281 |
Q |
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| T |
17582100 |
taaatcaaaataaaaaatgatagttcaagagttttgctttctcatccaatatggtaactgca |
17582161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 17582163 - 17582201
Alignment:
| Q |
309 |
ccattttggaggttgcccctaagatagcacaggttctgc |
347 |
Q |
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| T |
17582163 |
ccattttggaggttgcccctaagatagcacaagttctgc |
17582201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 195 - 339
Target Start/End: Complemental strand, 14745292 - 14745143
Alignment:
| Q |
195 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaat----atggtaactgcagtataatct |
290 |
Q |
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| T |
14745292 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatgcaatatgcatggtaactgtagtctagtct |
14745193 |
T |
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| Q |
291 |
acc-cacttgaaaagcaagccattttggaggttgcccctaagatagcaca |
339 |
Q |
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| T |
14745192 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcaca |
14745143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 53896354 - 53896391
Alignment:
| Q |
139 |
aggcaaggagttttcatcatcaaactgttacgattgac |
176 |
Q |
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| T |
53896354 |
aggcaaggagttttcaccaacaaactgttacgattgac |
53896391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 53896417 - 53896445
Alignment:
| Q |
199 |
cagtgaaaggtatatctgaattaaatcaa |
227 |
Q |
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| T |
53896417 |
cagtgaaaggtatatctgaattaaatcaa |
53896445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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