View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12689_high_5 (Length: 331)
Name: NF12689_high_5
Description: NF12689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12689_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 25881045 - 25880853
Alignment:
| Q |
1 |
tgctcaacagtgaagttag-ttatgacatgatcattttagaagtgaagagtgttcggtcggattctttattttgactaaattgtttgtgaatggtacttg |
99 |
Q |
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| T |
25881045 |
tgctcaacagtgaagttaggttataacatgatcattttagaagtgaagagtgttcggtcggattctttattttgactaaattgtttgtgaatggtacttg |
25880946 |
T |
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| Q |
100 |
agtgatgtatgggaaaaatcattgcttggatgtttttatttgtttaatgaggcttaaatttagacatgacaatttataataaattgtttggact |
193 |
Q |
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| T |
25880945 |
agtgatgtatgggaaaaatcattgcttggatgtttttatttgtttaatgaggcttaaatctagacaggacaatat-tgataaattgttttgact |
25880853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 25880785 - 25880725
Alignment:
| Q |
261 |
ggattatatattctgaacaaagtttaaggaacttttatattatataatttgaatatctgtg |
321 |
Q |
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| T |
25880785 |
ggattatatattccgaacaaagtttaaggaactttcatattatataatctgaatatttgtg |
25880725 |
T |
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