View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12689_high_6 (Length: 301)
Name: NF12689_high_6
Description: NF12689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12689_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 9218503 - 9218781
Alignment:
| Q |
3 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218503 |
gttagaagctctgcaagaactactccaaagctatacacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttc |
9218602 |
T |
|
| Q |
103 |
cttgtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgtt |
202 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218603 |
cttgtaccattgtcgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgtt |
9218702 |
T |
|
| Q |
203 |
ggtactcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
281 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9218703 |
ggtactcttaacatctctatggataattggaattgatgcagctgaatgtagatatgataaagcaccagctgtctctgct |
9218781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 9170420 - 9170698
Alignment:
| Q |
3 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
9170420 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttttcggttaatttatgtgtttgcatatactcgggatctaagtatccaagtgttc |
9170519 |
T |
|
| Q |
103 |
cttgtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgtt |
202 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9170520 |
cttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagctccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgtt |
9170619 |
T |
|
| Q |
203 |
ggtactcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
281 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
9170620 |
ggtactcttaacatctctatggataattggaattgatgcagatgaatgtagatacgataaagctccagctgtctctgct |
9170698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 9118858 - 9118580
Alignment:
| Q |
3 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
9118858 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttc |
9118759 |
T |
|
| Q |
103 |
cttgtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgtt |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9118758 |
cttgtaccactgttgctatctcggtttgatcaagtggaaccaatttggaagctccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgtt |
9118659 |
T |
|
| Q |
203 |
ggtactcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
281 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
9118658 |
ggtactcttaacatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgct |
9118580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 9199987 - 9200261
Alignment:
| Q |
3 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttc |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
9199987 |
gttagaagctctgcaagaaccactccaaagctataaacatcacttttctcggttagttgatgtgtttgcatatactcgggatctaagtatccaagtgttc |
9200086 |
T |
|
| Q |
103 |
cttgtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgtt |
202 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9200087 |
cttgcaccattgttgctatctctgtttgatcaagtggaaccaatctggaagctccaaagtcagaaacttttgcggtgtaattgtcatccaagagaatgtt |
9200186 |
T |
|
| Q |
203 |
ggtactcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctc |
277 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
9200187 |
ggtactcttaacatctctgtggataattggaattgatgcagctgaatgtagatatgataaagctccagctgtctc |
9200261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 9161597 - 9161872
Alignment:
| Q |
6 |
agaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcctt |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
9161597 |
agaagctctgcaagaactacaccaaagctataaacatcacttttctctgttagttgatgtgtttgcatatactccggatctaagtaaccaagagttcctt |
9161696 |
T |
|
| Q |
106 |
gtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
9161697 |
gtaccattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggt |
9161796 |
T |
|
| Q |
206 |
actcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
281 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||| |||||||| ||| || ||||| || |||||||||||| |
|
|
| T |
9161797 |
actcttaacatctctatggataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgct |
9161872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 9155685 - 9155960
Alignment:
| Q |
6 |
agaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcctt |
105 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9155685 |
agaagctccgcaagcactactccaaagctatagacatcacttttctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttcctt |
9155784 |
T |
|
| Q |
106 |
gtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
205 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| || || |||||||| || ||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
9155785 |
gaaccattgttgctatctcggtttgatcaagtggaactaacctcgaagctccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggt |
9155884 |
T |
|
| Q |
206 |
actcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
281 |
Q |
| |
|
||| || ||||||||||| ||||| || |||||||||| |||||||||||| || ||||| || |||||||||||| |
|
|
| T |
9155885 |
acttttgacatctctatggataatcggtattgatgcagatgaatgtagatacgataaagctccggctgtctctgct |
9155960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 9229388 - 9229650
Alignment:
| Q |
3 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttc |
102 |
Q |
| |
|
||||| |||||||| || ||||| || |||||||||||||||||||| || |||| ||| |||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
9229388 |
gttaggagctctgccagtactaccccgaagctataaacatcacttttctctgttagttggtgtgtttgcatatattctggatctaaatagccaagagttc |
9229487 |
T |
|
| Q |
103 |
cttgtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgtt |
202 |
Q |
| |
|
||||||||| || |||||| || |||||||||||||||||||||||||| || || || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9229488 |
cttgtaccacagtggctatcatagtatgatcaagtggaaccaatcttgaagcaccaaaatcagacacttttgcagtgtaattgtcatccaagagaatgtt |
9229587 |
T |
|
| Q |
203 |
ggtactcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagc |
265 |
Q |
| |
|
|| ||| || ||||||||||| |||||||| | ||||||| ||||||||||||||| ||||| |
|
|
| T |
9229588 |
ggcacttttgacatctctatggataattggtaaggatgcagatgaatgtagatatgataaagc |
9229650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 1868862 - 1868608
Alignment:
| Q |
11 |
ctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtacc |
110 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
1868862 |
ctctacaagaactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcacc |
1868763 |
T |
|
| Q |
111 |
attgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactct |
210 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||||||||| || || || ||||| || |||| | ||| ||||||||||| ||||| |
|
|
| T |
1868762 |
attgtggctatttcagtttgatcaagtggaaccaatcttgaagctccaaaatccgatactttggcggtgttggttctatctaagagaatgttatcactct |
1868663 |
T |
|
| Q |
211 |
taacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagc |
265 |
Q |
| |
|
| ||||||||||| || || || ||||| ||| ||||||||||||||||||||| |
|
|
| T |
1868662 |
tgacatctctatggatgatgggtattgaggcatatgaatgtagatatgacaaagc |
1868608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 1843253 - 1843000
Alignment:
| Q |
11 |
ctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtacc |
110 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
1843253 |
ctctacaagaactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcacc |
1843154 |
T |
|
| Q |
111 |
attgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactct |
210 |
Q |
| |
|
||||| ||||| || |||||||||| ||||||||||||||||||||| || || || ||||| || |||| | ||| ||||||||||| ||||| |
|
|
| T |
1843153 |
attgtggctatttcagtttgatcaattggaaccaatcttgaagctccaaaatctgatactttggctgtgttggttctatctaagagaatgttatcactct |
1843054 |
T |
|
| Q |
211 |
taacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaag |
264 |
Q |
| |
|
| ||||||||||| || ||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
1843053 |
tgacatctctatggattattggtattgaggcatatgaatgtagatatgacaaag |
1843000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 1857259 - 1857014
Alignment:
| Q |
16 |
caagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtaccattgt |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
1857259 |
caagaactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgt |
1857160 |
T |
|
| Q |
116 |
tgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaaca |
215 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| || || || ||||| || |||| | |||| ||||||||||| |||||| ||| |
|
|
| T |
1857159 |
ggctatttcagtttgatcaagtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgaca |
1857060 |
T |
|
| Q |
216 |
tctctatgaataattggaattgatgcagctgaatgtagatatgaca |
261 |
Q |
| |
|
|||||||| || || || |||| ||| ||||||||||||||||| |
|
|
| T |
1857059 |
tctctatggatgatgggtgttgaggcatatgaatgtagatatgaca |
1857014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 272
Target Start/End: Original strand, 1815772 - 1816041
Alignment:
| Q |
3 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttc |
102 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
1815772 |
gttagcagctccacaagaactactccaaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagttc |
1815871 |
T |
|
| Q |
103 |
cttgtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgtt |
202 |
Q |
| |
|
|||| |||||||| |||| || |||||||||||||||| ||| ||||| ||||| || || || ||||| || |||| | |||| ||||||||||| |
|
|
| T |
1815872 |
cttgcaccattgtggctacttcagtttgatcaagtggaatcaaccttgatgctccaaaatctgacactttagcggtgttggttccatctaagagaatgtt |
1815971 |
T |
|
| Q |
203 |
ggtactcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagct |
272 |
Q |
| |
|
| |||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||||| ||| |||||| |
|
|
| T |
1815972 |
agcactcttgacatctctatggataatgggtattgaggcagctgaatgcagatatgacagagctccagct |
1816041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 41703820 - 41703857
Alignment:
| Q |
24 |
actccaaagctataaacatcacttttttcggttaattg |
61 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
41703820 |
actccatagctataaacatcacttttatcggttaattg |
41703857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 40573421 - 40573369
Alignment:
| Q |
9 |
agctctgcaagaactactccaaagctataaacatcacttttttcggttaattg |
61 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||| || || |||||||| |
|
|
| T |
40573421 |
agctctgctaggactactccaaatctataaacatcactcttctctgttaattg |
40573369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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