View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1268_1D_high_10 (Length: 309)

Name: NF1268_1D_high_10
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1268_1D_high_10
NF1268_1D_high_10
[»] chr6 (1 HSPs)
chr6 (65-287)||(1963119-1963340)
[»] chr5 (4 HSPs)
chr5 (165-272)||(22081614-22081721)
chr5 (166-277)||(4269929-4270040)
chr5 (70-162)||(22081755-22081847)
chr5 (165-229)||(1582996-1583060)
[»] chr4 (4 HSPs)
chr4 (165-277)||(39334711-39334824)
chr4 (1-46)||(45584364-45584409)
chr4 (192-250)||(51272911-51272969)
chr4 (43-71)||(45584434-45584462)
[»] chr7 (2 HSPs)
chr7 (79-155)||(19224188-19224264)
chr7 (165-272)||(19224305-19224412)
[»] chr3 (2 HSPs)
chr3 (82-143)||(11324531-11324592)
chr3 (165-237)||(11324631-11324703)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 65 - 287
Target Start/End: Complemental strand, 1963340 - 1963119
Alignment:
Q  65 tgatatgggttcagaggtttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatgcatagcttt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  1963340 tgatatgggttcagaggtttaattagagacactaatggtaattggttattgtgtttcgccagcaattgtggtattactaccaatatgaatgcataacttt 1963241  T
Q  165 gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgtt 264  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  1963240 gaataatggctttc-acatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaatccacccttatacacatgtt 1963142  T
Q  265 attgacctaattatttggtttat 287  Q
    |||| ||| ||||||||||||||    
T  1963141 attggcctcattatttggtttat 1963119  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 22081721 - 22081614
Alignment:
Q  165 gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgtt 264  Q
    ||||||| |||||| |||||||||||||||||| ||||  |||||||||| |||||||||||||||||||||||| ||||| ||| | ||||||| ||||    
T  22081721 gaataatagctttcgacatgttgaatgtgaatctgattgtcaatcagctttgactttgattaaggaaggagttccgacaactcactcatatgcacctgtt 22081622  T
Q  265 attgacct 272  Q
    ||||||||    
T  22081621 attgacct 22081614  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 4270040 - 4269929
Alignment:
Q  166 aataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgtta 265  Q
    |||||||| |||| |||| ||||||||||||||||||  ||||||||||  ||||||||||||||||||||||| ||||| ||||| ||||||  |||||    
T  4270040 aataatggttttcgacatattgaatgtgaatcagattgccaatcagctttaactttgattaaggaaggagttccgacaactcacccctatgcatttgtta 4269941  T
Q  266 ttgacctaatta 277  Q
    ||||||| ||||    
T  4269940 ttgacctcatta 4269929  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 22081847 - 22081755
Alignment:
Q  70 tgggttcagaggtttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatgcatagct 162  Q
    |||||| ||||||| |||||||||| || |||| |||||||||||  ||||| |   || |||||||||||||||||||||||||||| ||||    
T  22081847 tgggtttagaggttaaattagagacgctgatggcaattggttattcagtttctctgccagttgtggtattactaccaatatgaatgcagagct 22081755  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 1582996 - 1583060
Alignment:
Q  165 gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaagg 229  Q
    |||||||||||||| ||||||||||||| |||||||||  || || |||| ||||||||||||||    
T  1582996 gaataatggctttcgacatgttgaatgtaaatcagattatcagtcggctttgactttgattaagg 1583060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 39334824 - 39334711
Alignment:
Q  165 gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgatt-aaggaaggagttccaacaacccacccttatgcacatgt 263  Q
    |||||||| ||||| ||||||||| ||||||||| |||  |||||| ||| |||||||||| ||||||||||||||  || | || |||||||||| |||    
T  39334824 gaataatgactttcgacatgttgagtgtgaatcaaattaccaatcaactttgactttgatttaaggaaggagttccggcatctcatccttatgcacttgt 39334725  T
Q  264 tattgacctaatta 277  Q
    ||||||||| ||||    
T  39334724 tattgacctcatta 39334711  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45584364 - 45584409
Alignment:
Q  1 attacctgcatttgaatttttaatttttcatacctttgtgcataat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45584364 attacctgcatttgaatttttaatttttcatacctttgtgcataat 45584409  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 51272969 - 51272911
Alignment:
Q  192 tgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacc 250  Q
    |||||||||||  ||||| |||| ||||||||| |||||| ||||||||||||| ||||    
T  51272969 tgaatcagattgtcaatcggctttgactttgatcaaggaatgagttccaacaactcacc 51272911  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 45584434 - 45584462
Alignment:
Q  43 taattaatattctgcagttcaatgatatg 71  Q
    |||||||||||||||||||||||||||||    
T  45584434 taattaatattctgcagttcaatgatatg 45584462  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 19224188 - 19224264
Alignment:
Q  79 aggtttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattactaccaatatgaatg 155  Q
    |||||||||| |||||| | ||||||||||||||||| ||||| ||||||||| || |||||||| |||||||||||    
T  19224188 aggtttaatttgagacattgatggtaattggttattgggtttccccagcaattatgatattactatcaatatgaatg 19224264  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 19224305 - 19224412
Alignment:
Q  165 gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgtt 264  Q
    ||||||||| |||  || ||||||||||||||||||||   |||  |||| |  ||||||||||||| ||||| | ||||| ||| ||||||||| ||||    
T  19224305 gaataatggattttgacctgttgaatgtgaatcagattgttaattggctttggttttgattaaggaaagagtttcgacaactcactcttatgcacctgtt 19224404  T
Q  265 attgacct 272  Q
    ||||||||    
T  19224405 attgacct 19224412  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 11324531 - 11324592
Alignment:
Q  82 tttaattagagacactaatggtaattggttattgtgtttcaccagcaattgtggtattacta 143  Q
    |||||||| ||||||||| ||||||||||||||  ||||| | |||| ||||||||||||||    
T  11324531 tttaattaaagacactaacggtaattggttattcggtttctctagcagttgtggtattacta 11324592  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 11324631 - 11324703
Alignment:
Q  165 gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagtt 237  Q
    |||||||||||||| |||| || ||||||||| |||||   | || |||| ||||||||||||||||||||||    
T  11324631 gaataatggctttcgacattttaaatgtgaattagattgttattcggctttgactttgattaaggaaggagtt 11324703  T

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