View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_high_4 (Length: 437)
Name: NF1268_1D_high_4
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 18542190 - 18542286
Alignment:
| Q |
33 |
acccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatggcagtgaa |
129 |
Q |
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| T |
18542190 |
acccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaggcacaggaggaaatggtagtgaa |
18542286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 18555277 - 18555343
Alignment:
| Q |
63 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatggcagtgaa |
129 |
Q |
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| T |
18555277 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaggcacaggaggaaatggcggtgaa |
18555343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 18550295 - 18550358
Alignment:
| Q |
59 |
atggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatgg |
122 |
Q |
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| T |
18550295 |
atggagtaaaaggaaatggtggtaaaggaggatcaaagggtggatcaggctcaggcgaaaatgg |
18550358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 41863753 - 41863871
Alignment:
| Q |
137 |
aacctgtgaacaaagctgccaacaggaaaaccaacaccagcagcagcagcatagctcaattggacacaaggttactgacttgttcgga---ggagggcgc |
233 |
Q |
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| T |
41863753 |
aacctgtgaacaaagctgccaacagaaaaaccaccaccaccagcagcagcatagctcaattggacgcaaggttactgacttgttcggacttggagggcac |
41863852 |
T |
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| Q |
234 |
cacaatcgccacgccaatg |
252 |
Q |
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| T |
41863853 |
cacaatcgccacgccaatg |
41863871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 414
Target Start/End: Original strand, 41863891 - 41864049
Alignment:
| Q |
247 |
ccaatgctatagccaaacggaggtgatttatcaaccagggcatgttgccaaacatcaaactaacaattgcaaccaaacacgccacaatcatgctgctacc |
346 |
Q |
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| T |
41863891 |
ccaatactatagccaaacagaggtgatttatcagccagggcatgttgccaaacatcaaactaacacatgcaac------cgcaaccatcacgctgctact |
41863984 |
T |
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| Q |
347 |
ggcactacctttgctactggcaccaccactgctgtgaaatgccaaggaagaaataggagggagcacaa |
414 |
Q |
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| T |
41863985 |
ggcaccacctttgctactagcaacaccacggc---gacatgccaaggaagaaataggagggagcacaa |
41864049 |
T |
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