View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_high_5 (Length: 426)
Name: NF1268_1D_high_5
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Complemental strand, 18094268 - 18093873
Alignment:
| Q |
7 |
gagatcgaatcatgcatacatggtggattattgtttagtcaatttgattggaacaattctcacaggttgagatttttccaaagtaatcccatattcatct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18094268 |
gagatcgaatcatgcatacatggtggattattgtttagtcaatttgattggaacaattctcacaggttgagatttttccaaagtaatcccatattcatct |
18094169 |
T |
|
| Q |
107 |
tctttattcaaatcatcaatatttaatccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaacattctaatagccaaag |
206 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18094168 |
tctttgttcaaatcatcaatatttaatccatcttcaagtttccaatcaaagcaattaatcaaagatcccaacatcataggcaacattctaatagccaaag |
18094069 |
T |
|
| Q |
207 |
gcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcactgtccaaaaacctttctggtacaaa |
306 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
18094068 |
gcaagccaggacaaattcttctaccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcattgtccaaaaacctttctggtataaa |
18093969 |
T |
|
| Q |
307 |
aacattagcattatcccatttatttgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttggaataatgtattcaccaatttc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18093968 |
aacattagcattatcccatttatttgggtctctaccaatcacccatgcattaaccaacacttgtgcatcttttggaataatgtattcaccaatttc |
18093873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 18104270 - 18103885
Alignment:
| Q |
13 |
gaatcatgcatacatggtggattattgtttagtcaatttgattggaacaattctcacaggttgagatttttccaaagtaatcccatattcatcttcttta |
112 |
Q |
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| T |
18104270 |
gaatcgtgcatatatggtagattattgtttagtcaatttgattggaacaattctcagaggttgagatttttccaaagtaatcccatattcatcttcttta |
18104171 |
T |
|
| Q |
113 |
ttcaaatcatcaatatttaatccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaacattctaatagccaaaggcaaac |
212 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18104170 |
ttcaaatcatcaatattcaatccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaatagccaaaggcaaac |
18104071 |
T |
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| Q |
213 |
caggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcactgtccaaaaacctttctggtacaaaaacatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |
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| T |
18104070 |
caggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaacttcactatccaaaaacctctctggtacaaaaacatt |
18103971 |
T |
|
| Q |
313 |
agcattatcccatttatttgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttggaataatgtattcaccaa |
398 |
Q |
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| T |
18103970 |
agcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttggaataatgtagtcaccaa |
18103885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 31131740 - 31131645
Alignment:
| Q |
133 |
tccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaacattctaatagccaaaggcaaaccaggacaaattcttct |
228 |
Q |
| |
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||||| ||| ||||||||||||||| |||||| ||| ||||| ||||| || |||||||||||||||| | |||| |||||||| |||||||| |
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| T |
31131740 |
tccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcatgccaggacatattcttct |
31131645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 31135184 - 31135279
Alignment:
| Q |
133 |
tccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaacattctaatagccaaaggcaaaccaggacaaattcttct |
228 |
Q |
| |
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||||| ||| ||||||||||||||| |||||| ||| ||||| ||||| || |||||||||||||||| | |||| |||||||| |||||||| |
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| T |
31135184 |
tccattttccagtttccaatcaaaggaattaatcaatgatcctaacattgtatgcaacattctaatagcaagtggcattccaggacatattcttct |
31135279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 31153855 - 31153760
Alignment:
| Q |
133 |
tccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaacattctaatagccaaaggcaaaccaggacaaattcttct |
228 |
Q |
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||||| ||| ||||||||||||||| |||||| ||| ||||| ||||| || |||||||||||||||| | |||| |||||||| |||||||| |
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| T |
31153855 |
tccattttccagtttccaatcaaaggaattaatcaatgatcctaacattgtatgcaacattctaatagcaagtggcattccaggacatattcttct |
31153760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 23244719 - 23244653
Alignment:
| Q |
211 |
accaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatt |
277 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| | ||| | |||||| ||||| ||||||||||| |
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| T |
23244719 |
accaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaatt |
23244653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 41143086 - 41143144
Alignment:
| Q |
139 |
ttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaacattctaa |
197 |
Q |
| |
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||||||||||||||||||| | |||| ||| ||||||||||||| | ||||||| |||| |
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| T |
41143086 |
ttcaagtttccaatcaaaggagttaatcaatgatcccaacatcaaatgcaacatcctaa |
41143144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 1370407 - 1370354
Alignment:
| Q |
331 |
tgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttggaat |
384 |
Q |
| |
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|||||||||||||||| ||||| ||||||| || | |||||||||||| ||||| |
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|
| T |
1370407 |
tgggtctctaccaatagcccatacattaacgaagatttgtgcatctttcggaat |
1370354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 23346848 - 23346803
Alignment:
| Q |
212 |
ccaggacaaattcttcttccagacccaaatggaataagctcaaaat |
257 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
23346848 |
ccaggacaaattcttctaccagcaccaaatggaataagttcaaaat |
23346803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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