View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_11 (Length: 390)
Name: NF1268_1D_low_11
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 384
Target Start/End: Complemental strand, 41894869 - 41894494
Alignment:
| Q |
9 |
gagatgaagagggaaagaagatttgccaaacatgaactctaatttataaaacccccgtctttattctccttcttctatgcaaaggcagtttattaagcat |
108 |
Q |
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| T |
41894869 |
gagaagaagagggaaagaagatttggcaaacatgaactctaatttataaaacccccgtctttattctccttcttctatgcaaaggcagtttattaagcat |
41894770 |
T |
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| Q |
109 |
gtaggtttgttaaagtcataacctttttagtccacaaatttcgttcgactattttgaaatattccaacgaaacacgatatggtgatgtcctcactcattt |
208 |
Q |
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| T |
41894769 |
gtaggtttgttaaagtcattacctttttagtcaacaaatttggttcgactattttgaaatattccaacgaaacacgatatggtgatgtcctcactcattt |
41894670 |
T |
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| Q |
209 |
tcatttattcgtgctgtttgagtgtactaaagattggacaatgttacaaagtattcatttttctcaaatagtctgttattaacattataatcatcacttc |
308 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41894669 |
tcatttattcgtgctgtgtgagtgtactaaagattggacaatgttacaaagtattcatttttctcaaatagtctgttattaacattataatcatcacttc |
41894570 |
T |
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| Q |
309 |
ttttttggcatgtattttttctccccgctaaagcatcacaaaaaattggatgaatttacgtaggaattgagtacaa |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41894569 |
ttttttggcatgtattttttctccccgctaaagcatcacaaaaaattggatgaatttacgtaggaattgagtacaa |
41894494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 91 - 361
Target Start/End: Original strand, 36758624 - 36758892
Alignment:
| Q |
91 |
aggcagtttattaagcatgtaggtttgttaaagtcataacctttttagtccacaaatttcgttcgactattttgaaatattccaacgaaacacgatatgg |
190 |
Q |
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|||||| || ||||||| |||||||||||| || |||| |||||||||| |||||||||| ||| |||||| ||||||| || ||||||| |||| |
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| T |
36758624 |
aggcaggttgttaagcaggtaggtttgttacaggcatagcctttttagttcacaaatttcattcagatattttaaaatatttcagtgaaacacagtatg- |
36758722 |
T |
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| Q |
191 |
tgatgtcctcactcattttcatttattcgtgctgtttgagtgtactaaagattggacaatgttacaaagtattcatttttctcaaatagtctgttattaa |
290 |
Q |
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|||||||||| ||||| || |||| || |||| |||||||| ||||||||| |||||||||||||||| ||||||| || || ||||| | |
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| T |
36758723 |
--atgtcctcacctatttttcttacttcgcgcagtttaagtgtactgtcgattggacagtgttacaaagtattcagttttctcggcaagcctattattca |
36758820 |
T |
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| Q |
291 |
cattataatc-atcacttcttttttggcatgtattttttctccccgctaaagcatcacaaaaaattggatga |
361 |
Q |
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|||| ||||| |||||||||||| |||| |||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
36758821 |
cattctaatctatcacttcttttctggcttgtattgtttctcccagctaaagcatcacaaaaaattgtatga |
36758892 |
T |
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