View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1268_1D_low_12 (Length: 338)

Name: NF1268_1D_low_12
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1268_1D_low_12
NF1268_1D_low_12
[»] chr5 (4 HSPs)
chr5 (4-228)||(14087331-14087558)
chr5 (219-337)||(14088806-14088924)
chr5 (297-333)||(39290030-39290066)
chr5 (297-333)||(39383270-39383306)
[»] chr3 (2 HSPs)
chr3 (54-319)||(2430331-2430603)
chr3 (295-331)||(31618258-31618294)
[»] chr6 (1 HSPs)
chr6 (54-242)||(12188880-12189070)
[»] chr1 (1 HSPs)
chr1 (54-152)||(22901959-22902057)
[»] chr8 (1 HSPs)
chr8 (50-138)||(16309003-16309091)
[»] chr7 (2 HSPs)
chr7 (57-152)||(19975945-19976040)
chr7 (285-326)||(19976177-19976218)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 14087331 - 14087558
Alignment:
Q  4 cgactgagatgaagaaggaggaggaggacgaagtttcgcattgtcctgatagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatg 103  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  14087331 cgactgaagtgaagaaggaggaggaggacgaagtttcgcgttgtcctgacagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcata 14087430  T
Q  104 ttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg---ctagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaa 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14087431 ttggtatgaggatttgagggcgaggtggtggtggtgagaaacggcggcggcactagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaa 14087530  T
Q  201 tttgtagaagaaatgagaatgagtgagt 228  Q
    ||||||||||||||||||||||||||||    
T  14087531 tttgtagaagaaatgagaatgagtgagt 14087558  T

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Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 14088806 - 14088924
Alignment:
Q  219 atgagtgagtgagatctagggttaatgagtctccccttctatctgatactaagacgacatcgtttctaataatcatatacgggcgggttcgggtacccgc 318  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088806 atgagtgagtgagatctagggttaatgagtctccccttctctctgatactaagacgacatcgtttctaataatcatatacgggcgggttcgggtacccgc 14088905  T
Q  319 gagtgaagctcctctaccc 337  Q
    | |||||||||||||||||    
T  14088906 gggtgaagctcctctaccc 14088924  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 39290030 - 39290066
Alignment:
Q  297 acgggcgggttcgggtacccgcgagtgaagctcctct 333  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  39290030 acgggcgggttcgggtacccgcgggtgaagttcctct 39290066  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 39383306 - 39383270
Alignment:
Q  297 acgggcgggttcgggtacccgcgagtgaagctcctct 333  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  39383306 acgggcgggttcgggtacccgcgggtgaagttcctct 39383270  T

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Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 54 - 319
Target Start/End: Complemental strand, 2430603 - 2430331
Alignment:
Q  54 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg- 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||  ||||||||     
T  2430603 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggtggtggtggttagaggcggcggcgg 2430504  T
Q  153 --ctagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaatttgtagaagaaatga---gaatgagtgagtgagatctagggttaatgag 247  Q
      ||||||||||  ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||    ||||| ||||| ||||||||||||| ||||    
T  2430503 cactagggtttgaagaggaaggtgaaagagtgtgaggcgagtgagagaattttttagaagaaatgaatgaaatgaatgagtcagatctagggttagtgag 2430404  T
Q  248 tctcccc-ttctatctgatactaagacgacatcgtttctaataatcatatacgggcgggttcgggtacccgcg 319  Q
    |||||||  |||     ||||||| ||||| |||||| || |||||  ||||||| |||||||||||||||||    
T  2430403 tctccccactcttcaatatactaaaacgacgtcgtttttactaatccaatacgggtgggttcgggtacccgcg 2430331  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 31618294 - 31618258
Alignment:
Q  295 atacgggcgggttcgggtacccgcgagtgaagctcct 331  Q
    ||||||||||||||||||||||||| |||||||||||    
T  31618294 atacgggcgggttcgggtacccgcgggtgaagctcct 31618258  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 12189070 - 12188880
Alignment:
Q  54 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg- 152  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||  ||||||||     
T  12189070 agagaacggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtggtggttagatgcggcggcgg 12188971  T
Q  153 --ctagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaatttgtagaagaaatgagaatgagtgagtgagatctagggtta 242  Q
      ||||||||||  ||||||||||||||||||||||| ||  ||||||| ||| |||||||||||| ||||| || || |||||||||||||    
T  12188970 cactagggtttgaagaggaaggtgaaagagtgtgaggtgaatgagagaattttttagaagaaatga-aatgaatgggttagatctagggtta 12188880  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 22901959 - 22902057
Alignment:
Q  54 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||| || |||||    
T  22901959 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggtggttgtggttagaagcgacggcg 22902057  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 16309003 - 16309091
Alignment:
Q  50 tgatagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggt 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||    
T  16309003 tgatagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttgataggaggatttgatggtgaggtggttgtggt 16309091  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 19975945 - 19976040
Alignment:
Q  57 gaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg 152  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||| || | ||| |||| ||||||||    
T  19975945 gaaaggcgtaaaacaaagtgaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggttgttggggttagaagcggcggcg 19976040  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 19976177 - 19976218
Alignment:
Q  285 taataatcatatacgggcgggttcgggtacccgcgagtgaag 326  Q
    ||||||| | ||||||||||||||||||||||||| ||||||    
T  19976177 taataattaaatacgggcgggttcgggtacccgcgggtgaag 19976218  T

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