View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_13 (Length: 332)
Name: NF1268_1D_low_13
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 40556699 - 40556840
Alignment:
| Q |
7 |
ataacaccttctaaagaaggagagattggatttgttcaatgttgtccaagacttagaggnnnnnnntttgaagattggcaagccaaaagaattgtcggta |
106 |
Q |
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| T |
40556699 |
ataacaccttctaaagaaggagagattggatttgttcaatgttgtccaagacttagaggaaaaaaatttgaagattggcaagccaaaagaattgtcggta |
40556798 |
T |
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| Q |
107 |
gttataatattcgttctaaagatgtttcaaaatataattctc |
148 |
Q |
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| T |
40556799 |
gttattatattcgttctaaagatgtttcaaaatataattctc |
40556840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 40556865 - 40556929
Alignment:
| Q |
175 |
tttgttttttgaataaaaagaaactttatctttgttttgtttcattcagtattggtagaaaaactttgtt |
244 |
Q |
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| T |
40556865 |
tttgttttttgaataaaaagaaactttatc-----tttgtttcattcagtattggtagaaaaactttgtt |
40556929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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