View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_16 (Length: 290)
Name: NF1268_1D_low_16
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 38161308 - 38161597
Alignment:
| Q |
1 |
atcaagcaaagtactaaccctcggatcacaaggtccaggagtagtcttacaaaaactattgatcccttcatcaagagtaacctttacacttttcccaaaa |
100 |
Q |
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| T |
38161308 |
atcaagcaaagtactaaccctcggatcacaaggtccaggagtagtcttacaaaaactattgatcccttcatcaagagtaacctttacacttttcccaaaa |
38161407 |
T |
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| Q |
101 |
gaaggctaaggaccctgcaacttattattatccaaagaaacattagccaaactcgataaactcatcaaagaggatggaacaacacctgttaactgattat |
200 |
Q |
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| T |
38161408 |
gaaggcaaaggaccctgcaacttattattatccaaagaaacattcgccaaactcgataaactcatcaaagaggatggaacaacacctgttaactgattat |
38161507 |
T |
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| Q |
201 |
cacgaagctgaagatcaaacaagttagtacaattagacaaatcaggaattggaccagtaaacttattcttctgaaaccaaacttgagcca |
290 |
Q |
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| T |
38161508 |
cacgaagctgaagatcaaacaagttagtacaattagacaaatcaggaattgaaccagtaaacttattcttctgaaaccaaacttgagcca |
38161597 |
T |
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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 289
Target Start/End: Complemental strand, 31437791 - 31437587
Alignment:
| Q |
85 |
tacacttttcccaaaagaaggctaaggaccctgcaacttattattatccaaagaaacattagccaaactcgataaactcatcaaagaggatggaacaaca |
184 |
Q |
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| T |
31437791 |
tacacctttcccaaaagaaggaaaaggaccctgcaattgattgttgtccaaggtaacgtttcgcaaactggacaaaaccattaaagaaggcggaacaaca |
31437692 |
T |
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| Q |
185 |
cctgttaactgattatcacgaagctgaagatcaaacaagttagtacaattagacaaatcaggaattggaccagtaaacttattcttctgaaaccaaactt |
284 |
Q |
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| T |
31437691 |
cctgttaactgattatcccgaagttgtagatcaaataaattggtacacttggacaaatcaggaatttcaccagtgaacttgttcttcataagccaaactt |
31437592 |
T |
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| Q |
285 |
gagcc |
289 |
Q |
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| T |
31437591 |
gagcc |
31437587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 15062042 - 15061945
Alignment:
| Q |
167 |
aaagaggatggaacaacacctgttaactgattatcacgaagctgaagatcaaacaagttagtacaattagacaaatcaggaattggaccagtaaactt |
264 |
Q |
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| T |
15062042 |
aaagaagatggaacaacacctgttaactgattatcccgaagctgcagatcaaataaatcggtacagttggagaaatcgggaatttgaccagtaaactt |
15061945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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