View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1268_1D_low_17 (Length: 256)

Name: NF1268_1D_low_17
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1268_1D_low_17
NF1268_1D_low_17
[»] chr6 (1 HSPs)
chr6 (2-119)||(21424392-21424509)
[»] chr8 (3 HSPs)
chr8 (2-119)||(14161242-14161359)
chr8 (130-248)||(6085279-6085397)
chr8 (144-235)||(6060340-6060431)
[»] chr7 (2 HSPs)
chr7 (2-119)||(29706626-29706743)
chr7 (32-83)||(41172215-41172266)
[»] chr1 (1 HSPs)
chr1 (30-83)||(19832206-19832259)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 21424392 - 21424509
Alignment:
Q  2 cagaaatgaaggaaccgaaaaatgattgtgtgtgtgaaccttgtgtgcgtgaggatgccacgaattttgagatttgattttttagggttcttgcaggttg 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21424392 cagaaatgaaagaaccgaaaaatgattgtgtgtgtgaaccttgtgtgcgtaaggatgccatgaattttgagatttgattttttagggttcttgcaggttg 21424491  T
Q  102 aagggtgactgagaagaa 119  Q
    |||||||| |||||||||    
T  21424492 aagggtgattgagaagaa 21424509  T

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Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 14161242 - 14161359
Alignment:
Q  2 cagaaatgaaggaaccgaaaaatgattgtgtgtgtgaaccttgtgtgcgtgaggatgccacgaattttgagatttgattttttagggttcttgcaggttg 101  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14161242 cagaaatgaaagaaccggaaaatgattgtgtgtgtgaaccttgtgtgcgtaaggatgccatgaattttgagatttgattttttagggttcttgcaggttg 14161341  T
Q  102 aagggtgactgagaagaa 119  Q
    |||||||| |||||||||    
T  14161342 aagggtgattgagaagaa 14161359  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 6085279 - 6085397
Alignment:
Q  130 aacatttgtttcatcacttcccaatatgttgtcagaatgatacgggtcataccagacaaaaacatgatccgacttcaaatttgttgtgtttatgtgatgc 229  Q
    ||||||||||||||||||| || ||||| ||||||||   ||||| |||||||| ||||||| |||||| || |||||  |||| |||||| ||||||||    
T  6085279 aacatttgtttcatcactttcccatatgatgtcagaaatgtacggatcataccacacaaaaatatgatctgaattcaatcttgtggtgtttttgtgatgc 6085378  T
Q  230 cacttagacgcatatccca 248  Q
    |||||||||||||||||||    
T  6085379 cacttagacgcatatccca 6085397  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 6060340 - 6060431
Alignment:
Q  144 cacttcccaatatgttgtcagaatgatacgggtcataccagacaaaaacatgatccgacttcaaatttgttgtgtttatgtgatgccactta 235  Q
    |||||| ||||||| |||||||| | || || |||||||| ||||| ||||||||||| ||||| ||||| |||||| | |||| |||||||    
T  6060340 cacttctcaatatggtgtcagaaaggtatggatcataccacacaaacacatgatccgatttcaattttgtggtgtttttatgattccactta 6060431  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 29706626 - 29706743
Alignment:
Q  2 cagaaatgaaggaaccgaaaaatgattgtgtgtgtgaaccttgtgtgcgtgaggatgccacgaattttgagatttgattttttagggttcttgcaggttg 101  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29706626 cagaaatgaaagaaccggaaaatgattgtgtgtgtgaaccttgtgtgcgtaaggatgccatgaattttgagatttgattttttagggttcttgcaggttg 29706725  T
Q  102 aagggtgactgagaagaa 119  Q
    |||||||| |||||||||    
T  29706726 aagggtgattgagaagaa 29706743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 41172215 - 41172266
Alignment:
Q  32 tgtgtgaaccttgtgtgcgtgaggatgccacgaattttgagatttgattttt 83  Q
    |||||||||||||||||||||||||||||| | ||||  |||||||||||||    
T  41172215 tgtgtgaaccttgtgtgcgtgaggatgccatggatttcaagatttgattttt 41172266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 19832206 - 19832259
Alignment:
Q  30 tgtgtgtgaaccttgtgtgcgtgaggatgccacgaattttgagatttgattttt 83  Q
    |||||||||||||||||||||||||||||||| |  |||  |||||||||||||    
T  19832206 tgtgtgtgaaccttgtgtgcgtgaggatgccatgtctttcaagatttgattttt 19832259  T

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